Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12650 197 / 5e-63 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024493 [exp] 380 / 7e-135 AT1G12650 228 / 4e-75 unknown protein Lus10020336 [exp] 336 / 2e-117 AT1G12650 216 / 2e-70 unknown protein Lus10005657 [exp] 283 / 2e-96 AT1G12650 179 / 1e-55 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G110000 [exp] 273 / 9e-93 AT1G12650 215 / 5e-70 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06102 [flax] [poplar] RRP36 rRNA biogenesis protein RRP36
Representative CDS sequence Show only first row Show all	>Lus10017837 pacid=23148831 polypeptide=Lus10017837 locus=Lus10017837.g ID=Lus10017837.BGIv1.0 annot-version=v1.0 ATGGCGAAACCAAGTAGCGATGTTGCGGCTCCGAGCAAAAATCAGTTTCCGGAAAGTGAAGAAGAAGACGAGGAGCTTTTGTCTTCTTCGTCAGAAGAGG ATGATGAGGAAGATGAGTTAGAGAGAGAACTTGCCGATGTCACGTTTGAGGAGCTGCAGAAAGCGATGTCCAATGGTTCTGATTCAGTTTACAGAAAGCC CAACTTAGAGAAGAAGTCTAAGAGAGCCAACAAGAACATGCCAGTGGAGGTCACTTGCAAAAAGCCAGTTAGTAGGTTTCGAGAGATCATTCAAGCTCCC AAGAAGGTGGTACGTGATCCTCGCTTCGAGTCCTTGTGCGGAACACTAAACGTGGAGGGGTATAGGAAAAGATACAATTTTCTGTATGAGAATGATCTTC CTGCTGAAAAAGAGGAGTTAAAGAAACAGCTTAAGAAATCAAAAGACCCTGTTGCCAGAGAGCGATTGAAGGAGCAAATGGCTTGGATTGACAAGCAGCT GAAGTTTGACACGTCAAGACAAGTGGAGTCGTCCATTCTGACTGAACACAAGAAGAAAGAGAGGGAAGCAGCAAAGCGTGGCAAACAGCCATATTATCTC AAGAAATCTGATATAAAGAAACAGAGGCTGGTGGACAAGTATAAGGAACTCAAGGCCACTGGCAAGCTTGAGACTTTCATTGAGAAGAAAAGAAAGAAGA ATGCTGCCAAGGATCACAGGTTTATGCCATACCGAAGACCAGCAACAGATGAGTAG
AA sequence Show only first row Show all	>Lus10017837 pacid=23148831 polypeptide=Lus10017837 locus=Lus10017837.g ID=Lus10017837.BGIv1.0 annot-version=v1.0 MAKPSSDVAAPSKNQFPESEEEDEELLSSSSEEDDEEDELERELADVTFEELQKAMSNGSDSVYRKPNLEKKSKRANKNMPVEVTCKKPVSRFREIIQAP KKVVRDPRFESLCGTLNVEGYRKRYNFLYENDLPAEKEELKKQLKKSKDPVARERLKEQMAWIDKQLKFDTSRQVESSILTEHKKKEREAAKRGKQPYYL KKSDIKKQRLVDKYKELKATGKLETFIEKKRKKNAAKDHRFMPYRRPATDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12650			unknown protein		Lus10017837 [exp]	0	1
AT1G12650			unknown protein		Lus10024493 [exp]	1.0	0.8899
AT3G10530			Transducin/WD40 repeat-like su...		Lus10037324 [exp]	1.4	0.8857
AT2G06010		ORG4	OBP3-responsive gene 4 (.1)		Lus10029795 [exp]	3.5	0.8425
AT4G27090			Ribosomal protein L14 (.1)		Lus10003627 [exp]	3.6	0.8406
AT1G07290		GONST2	golgi nucleotide sugar transpo...		Lus10001205 [exp]	4.0	0.8347
AT5G36260			Eukaryotic aspartyl protease f...		Lus10027001 [exp]	4.4	0.8307
AT4G10090		ELP6	elongator protein 6 (.1)		Lus10040357 [exp]	5.2	0.8494
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10027795 [exp]	5.5	0.8817
AT4G17190		FPS2	farnesyl diphosphate synthase ...		Lus10022545 [exp]	6.3	0.8794
AT4G14570		AtAARE, AARE	acylamino acid-releasing enzym...		Lus10039405 [exp]	8.5	0.8545

Compare expression of checked genes

Lus10017837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.