Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16020 190 / 6e-55 GEX3 gamete-expressed 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034090 [exp] 430 / 8e-147 AT5G16020 358 / 1e-114 gamete-expressed 3 (.1) Lus10003058 [exp] 375 / 1e-125 AT5G16020 506 / 2e-172 gamete-expressed 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G104500 [exp] 244 / 3e-75 AT5G16020 518 / 2e-176 gamete-expressed 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017838 pacid=23148841 polypeptide=Lus10017838 locus=Lus10017838.g ID=Lus10017838.BGIv1.0 annot-version=v1.0 ATGCAGCATCATCAATGGAAACTATTATGGAGTCCTTGCCCCACGCTTTTACTGTATGCCTACCTTTTAGGTCGCATACAAGGTGTTGAAAACTGTTATT TCGCTTCAGTCCCTGTGATTGATCAAAGCGAAGCTAGCTTGTATATTTCAAATACGAGAGGAGAAGTTTATTCGTCGTCTCTTGGCGATCCGCGGTTCAA CTGGGTACAGGATCTGAGCTTCCTTGAGGAAGCTTTCACCATTACTCCGGCCAACAATGGACGTTTGTTTGTCACCATACATGTGAAGGAAATTTTATTG GCGCTGGACGTCTTCACTGGGAGCATCCTTTGGCAGCAAGGTATTGGACCCCTGAGAGCTCAAGATAGTACACCAGTTGTCTATTCCAACGGGTGTTCTA GGAGAAACACATATTGTATTATTAAGTCTACTAACGAGTCATTTACTCGAGCTAGTATTCAAATGAGAGCGAACTCGGGTTTTGTGCGGAATACAGCTAA TTGTACCTTCTTCTTTTCTATGAGCATGTCAGGGTGGATATCTATTGGTTCTCTGGATGGGTTTCTGTACTCCATATCACCTGCAGGAACACTAAAGAAG TTCGCCAAGGCATCTTCCTCCGATTCCGTGATACAAGTTCGCCCATTTGTTGATTGCTATGGGTATGCAGTTTATATATCACAAGCACAAATGGAAGGAA AAGCCAGCCACTTGATTGGAGACTACAATTATGTAGCAGCGATGAAGCCTACTGGTGTAACCTTCACTCTGCTGGTTCCAGCAACCGGGACTGTCTATTG GTCCGAAAGCTACCCTGTTGAGAAGACTGTGTCCACCTGCTCACAAGCAAATCCAAAGCCTGTTGTTGACTACCCAGGTAGGGAACAGAAGGAGACTACT ATTATTTTTGCTGTTCGAGTCGATTGTCCTGGTCATTTTGGTTGGACTGGTGAGATTCTGCTGCATTTTCTGGAACAAGGAAAAGATTCAGGGGCAACAC TTGGGAAGTTTTCTTCATAA
AA sequence Show only first row Show all	>Lus10017838 pacid=23148841 polypeptide=Lus10017838 locus=Lus10017838.g ID=Lus10017838.BGIv1.0 annot-version=v1.0 MQHHQWKLLWSPCPTLLLYAYLLGRIQGVENCYFASVPVIDQSEASLYISNTRGEVYSSSLGDPRFNWVQDLSFLEEAFTITPANNGRLFVTIHVKEILL ALDVFTGSILWQQGIGPLRAQDSTPVVYSNGCSRRNTYCIIKSTNESFTRASIQMRANSGFVRNTANCTFFFSMSMSGWISIGSLDGFLYSISPAGTLKK FAKASSSDSVIQVRPFVDCYGYAVYISQAQMEGKASHLIGDYNYVAAMKPTGVTFTLLVPATGTVYWSESYPVEKTVSTCSQANPKPVVDYPGREQKETT IIFAVRVDCPGHFGWTGEILLHFLEQGKDSGATLGKFSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16020		GEX3	gamete-expressed 3 (.1)		Lus10017838 [exp]	0	1
AT5G59845			Gibberellin-regulated family p...		Lus10001407 [exp]	1.7	0.7602
AT5G18070		DRT101	DNA-DAMAGE-REPAIR/TOLERATION 1...		Lus10007548 [exp]	2.6	0.7753
AT5G35400			Pseudouridine synthase family ...		Lus10022949 [exp]	6.2	0.7613
AT3G54640		TRP3, TSA1	TRYPTOPHAN-REQUIRING 3, trypto...		Lus10002719 [exp]	11.6	0.6772
AT2G45250			Integral membrane protein hemo...		Lus10003319 [exp]	24.8	0.7565
AT5G27260			unknown protein		Lus10035759 [exp]	27.8	0.6757
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10035703 [exp]	28.6	0.6953
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10036924 [exp]	34.4	0.6561
AT5G48720		XRI1, XRI	x-ray induced transcript 1 (.1...		Lus10038181 [exp]	34.8	0.6866
AT5G56090		COX15	cytochrome c oxidase 15 (.1)		Lus10034065 [exp]	39.0	0.6553

Compare expression of checked genes

Lus10017838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.