Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12740 608 / 0 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT5G48000 305 / 1e-99 THAH1, THAH, CYP708A2 THALIANOL HYDROXYLASE 1, THALIANOL HYDROXYLASE, "cytochrome P450, family 708, subfamily A, polypeptide 2", cytochrome P450, family 708, subfamily A, polypeptide 2 (.1.2.3.4.5) AT1G78490 298 / 7e-97 CYP708A3 "cytochrome P450, family 708, subfamily A, polypeptide 3", cytochrome P450, family 708, subfamily A, polypeptide 3 (.1) AT1G55940 289 / 1e-91 CYP708A1 "cytochrome P450, family 708, subfamily A, polypeptide 1", cytochrome P450, family 708, subfamily A, polypeptide 1 (.1) AT3G44970 259 / 7e-82 Cytochrome P450 superfamily protein (.1) AT4G15396 253 / 9e-80 CYP702A6 "cytochrome P450, family 702, subfamily A, polypeptide 6", cytochrome P450, family 702, subfamily A, polypeptide 6 (.1) AT3G50660 249 / 1e-77 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT4G15310 246 / 5e-77 CYP702A3 "cytochrome P450, family 702, subfamily A, polypeptide 3", cytochrome P450, family 702, subfamily A, polypeptide 3 (.1) AT5G05690 244 / 5e-77 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT4G15393 243 / 6e-76 CYP702A5 "cytochrome P450, family 702, subfamily A, polypeptide 5", cytochrome P450, family 702, subfamily A, polypeptide 5 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024495 [exp] 785 / 0 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10005762 [exp] 374 / 6e-126 AT1G12740 429 / 1e-146 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10027434 [exp] 335 / 4e-111 AT1G12740 342 / 3e-113 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10042788 [exp] 294 / 2e-95 AT1G12740 397 / 1e-134 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10028628 [exp] 286 / 6e-93 AT1G12740 360 / 9e-121 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10040193 [exp] 235 / 2e-72 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10028345 [exp] 228 / 1e-69 AT4G36380 652 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10014850 [exp] 226 / 4e-69 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10041794 [exp] 223 / 6e-68 AT4G36380 643 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G109100 [exp] 687 / 0 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.003G122500 [exp] 675 / 0 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.004G183800 [exp] 391 / 2e-133 AT1G12740 476 / 1e-165 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.009G143600 [exp] 390 / 3e-133 AT1G12740 475 / 3e-165 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270404 [exp] 377 / 5e-128 AT1G12740 443 / 9e-153 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270500 [exp] 377 / 6e-128 AT1G12740 443 / 1e-152 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270400 [exp] 377 / 7e-128 AT1G12740 442 / 2e-152 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270600 [exp] 375 / 3e-127 AT1G12740 441 / 5e-152 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.009G064800 [exp] 371 / 1e-125 AT1G12740 452 / 2e-156 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270300 [exp] 371 / 2e-125 AT1G12740 437 / 2e-150 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10017839 pacid=23148860 polypeptide=Lus10017839 locus=Lus10017839.g ID=Lus10017839.BGIv1.0 annot-version=v1.0 ATGTGGGTGTTCTTCTTTGGAACTTTGCTTGTTATAGGCCTCATACGTTGGGTATACCTTTGGAGAAATCCCAGATGCAATGGCAAACTCCCACCAGGTT CAATGGGCTTACCACTCCTTGGTGAGACCTTTGACTTCTTTGCTCCCAACACAACTTCTGAGATTCCTCCTTTTGTTAAAGAGAGGATGAAAAGATATGG ATCGATATTCCGGACTAGTTTGGTTGGAAGGTCAATTGTCGTATCAACAGACCCTGATCTCAACTACTTCATATTCCAACAAGAGGGTCATCTGTTCCAA AGCTGGTACCCAGACACATTCACAGAGATCTTTGGACGACAAAATGTGGGCTCATTACATGGGTTTATGTACAAGTACTTGAAGAACTTGGTGCTCAATC TCTTCGGTCCTGAAAGCCTCAAGAAAATGATCCCTGAAATTGAACAGACAACATCAAAGAGATTAAAACAATGGTCTCATCAAGACACTGTAGAAATGAA AGAAGCAACTGCAACTACTATATTCGATCTTACTGCAAAGAAGTTGATTAGCTACGATCAAGACAATTCATCAGAGAATCTAAGAGAGAACTTTGTTGCA TTCATACAAGGCTTAATCTCCTTCCCACTGGATATCCCTGGAACAGCATATCATAAATGTCTAAAGGGCAGGAAAAGGGCAATGAAGATGCTGAAGAACC TGCTACATGAAAGACGAATTAACCCAAGAAAGCATCAAGGGGATTTCTTTGATCATGTACTTGAAGAACTTCATAGGGACAACACAATCCTCACAGAAGA AATTGCTCTAGACTTGATGTTTGTGCTACTATTTGCAAGCTTTGAAACAACATCTCTAGCTTTAACCTTGGCCATGAAATTCCTGTCAGACCATCCGCGG GTGTTGAAGCAGTTAACGGAAGAGCATGAAGAAATTCTAAGAAAGCGACAGAATGCTGACTCTGGCCTTACATGGAAAGAGTATAAATCAATGACATTTA CATTTCAGTTCATCAATGAAACAGTGAGACTGGCAAACATAGTTCCGGGAATCTTCAGAAAAGTTCTAAGAGACATTCAGTTCAAAGGATATACCATTCC AGCGGGTTGGGCAGTTATGGTCTGTCCCCCAGCCGTTCACTTAAACCCAGCAAAATATGAAGATCCTCTTGCCTTCAATCCATGGAGATGGGATGGTATG GCTAAACACTCATGA
AA sequence Show only first row Show all	>Lus10017839 pacid=23148860 polypeptide=Lus10017839 locus=Lus10017839.g ID=Lus10017839.BGIv1.0 annot-version=v1.0 MWVFFFGTLLVIGLIRWVYLWRNPRCNGKLPPGSMGLPLLGETFDFFAPNTTSEIPPFVKERMKRYGSIFRTSLVGRSIVVSTDPDLNYFIFQQEGHLFQ SWYPDTFTEIFGRQNVGSLHGFMYKYLKNLVLNLFGPESLKKMIPEIEQTTSKRLKQWSHQDTVEMKEATATTIFDLTAKKLISYDQDNSSENLRENFVA FIQGLISFPLDIPGTAYHKCLKGRKRAMKMLKNLLHERRINPRKHQGDFFDHVLEELHRDNTILTEEIALDLMFVLLFASFETTSLALTLAMKFLSDHPR VLKQLTEEHEEILRKRQNADSGLTWKEYKSMTFTFQFINETVRLANIVPGIFRKVLRDIQFKGYTIPAGWAVMVCPPAVHLNPAKYEDPLAFNPWRWDGM AKHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10017839 [exp]	0	1
AT2G21100			Disease resistance-responsive ...		Lus10034478 [exp]	9.7	0.8798
AT3G51930			Transducin/WD40 repeat-like su...		Lus10039568 [exp]	19.4	0.8763
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021045 [exp]	25.3	0.8669
AT5G62620			Galactosyltransferase family p...		Lus10004256 [exp]	31.0	0.8634
AT3G55230			Disease resistance-responsive ...		Lus10030318 [exp]	35.5	0.8611
AT2G16750			Protein kinase protein with ad...		Lus10019787 [exp]	36.1	0.8586
AT3G18180			Glycosyltransferase family 61 ...		Lus10036003 [exp]	42.5	0.8579
AT2G28160	bHLH	ATFIT1, ATBHLH2...	ARABIDOPSIS FE-DEFICIENCY INDU...		Lus10016151 [exp]	47.6	0.8504
AT5G56040			Leucine-rich receptor-like pro...		Lus10018094 [exp]	51.7	0.8574
AT3G26590			MATE efflux family protein (.1...		Lus10036854 [exp]	52.3	0.8485

Compare expression of checked genes

Lus10017839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.