Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63120 374 / 3e-130 ATRBL2 RHOMBOID-like 2 (.1) AT5G07250 360 / 2e-124 ATRBL3 RHOMBOID-like protein 3 (.1.2) AT1G12750 336 / 2e-115 ATRBL6 RHOMBOID-like protein 6 (.1.2.3) AT2G29050 336 / 3e-114 ATRBL1 RHOMBOID-like 1 (.1.2) AT3G53780 304 / 9e-102 ATRBL4 RHOMBOID-like protein 4 (.1.2) AT4G23070 270 / 3e-89 ATRBL7 RHOMBOID-like protein 7 (.1) AT1G52580 233 / 5e-75 ATRBL5 RHOMBOID-like protein 5 (.1) AT1G77860 206 / 7e-64 KOM KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) AT1G25290 45 / 3e-05 ATRBL10 RHOMBOID-like protein 10 (.1.2) AT5G38510 42 / 0.0003 Rhomboid-related intramembrane serine protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024497 [exp] 543 / 0 AT1G63120 450 / 2e-160 RHOMBOID-like 2 (.1) Lus10023789 [exp] 339 / 2e-115 AT2G29050 488 / 3e-173 RHOMBOID-like 1 (.1.2) Lus10003971 [exp] 345 / 1e-113 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10027436 [exp] 333 / 6e-113 AT5G07250 392 / 1e-135 RHOMBOID-like protein 3 (.1.2) Lus10005464 [exp] 325 / 4e-110 AT2G29050 453 / 1e-159 RHOMBOID-like 1 (.1.2) Lus10004965 [exp] 321 / 1e-108 AT2G29050 486 / 6e-173 RHOMBOID-like 1 (.1.2) Lus10028036 [exp] 189 / 1e-56 AT1G77860 323 / 1e-108 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) Lus10003743 [exp] 188 / 2e-56 AT1G77860 333 / 1e-112 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) Lus10022969 [exp] 47 / 1e-05 AT1G25290 309 / 3e-104 RHOMBOID-like protein 10 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G122900 [exp] 460 / 3e-164 AT1G63120 374 / 3e-130 RHOMBOID-like 2 (.1) Potri.001G108700 [exp] 449 / 8e-160 AT1G63120 332 / 8e-114 RHOMBOID-like 2 (.1) Potri.015G142000 [exp] 392 / 2e-137 AT5G07250 294 / 2e-98 RHOMBOID-like protein 3 (.1.2) Potri.012G139600 [exp] 370 / 1e-128 AT5G07250 324 / 6e-110 RHOMBOID-like protein 3 (.1.2) Potri.009G031900 [exp] 352 / 6e-121 AT2G29050 434 / 7e-152 RHOMBOID-like 1 (.1.2) Potri.001G241300 [exp] 350 / 5e-120 AT2G29050 441 / 6e-155 RHOMBOID-like 1 (.1.2) Potri.006G086300 [exp] 346 / 3e-118 AT2G29050 422 / 6e-147 RHOMBOID-like 1 (.1.2) Potri.002G090400 [exp] 184 / 9e-55 AT1G77860 298 / 1e-98 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) Potri.003G019500 [exp] 42 / 0.0003 AT1G25290 354 / 3e-122 RHOMBOID-like protein 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [flax] [poplar] Rhomboid-like PF01694 [flax] [poplar] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Lus10017840 pacid=23148822 polypeptide=Lus10017840 locus=Lus10017840.g ID=Lus10017840.BGIv1.0 annot-version=v1.0 ATGGCGCCTGTGGATCTAGAGCGAGGCTCGAAGAACGGAGGAGGGGACACAAACAACAGAAGCTTGACTCCCTACTATGTCGACACTTCTGAGAAGAAAT GGACTTCTTGGCTGGTTCCCATGTTTGTCCTCGCGAATGTTGCTGTGTTCATTATAGCCATGTATGTCAACAATTGTCCTCGCGACAATATTGGGTTTAA AGGAAATTGTGTCGCAAGGTTCCTTGGGAGGTTATCTTTCCAGCCTCTGAGGGAGAACCCTCTCTTTGGTCCATCTTCTACTACACTGGAAAAAATTGGG GCTTTGGAATGGGATAAAGTAGTGCATAAACATCAAGGGTGGAGACTCGTTACTTGCATGTGGTTGCATGCTGGAGTTATTCATCTTCTTGCAAACATGC TGAGCTTGGTCTTCATTGGAATTCGGCTTGAACAACAATTTGGATTTTTGAGAGTTGGGGTGATTTACCTGATATCTGGACTTGGGGGTAGCATACTGTC CGCCCTTTTCATCCAAAAGAACATTTCCGTTGGTGCTTCTGGTGCTCTCTTCGGACTTTTGGGCGCCATGTTATCTGAGCTTCTTACTAACTGGACTATA TACAGTAACAAGATTGCTGCTCTGGTCACACTCCTAGTAATCATCGCCATCAACTTAGCAATAGGAATTCTACCACACGTAGACAACTTTGCTCACATTG GTGGCTTCTTGGCTGGTTTCCTTTTGGGGTTTGTATTTCTTGTTCGACCACAGTTTGGGTGGGTCAAGAGCCGACATCTGCCACCAGGTGCACACGTTAA ATCCAAGCACAAGGCTTACCAGTACGTCCTCTGGGTGGTTGCTGCAGTACTCCTCGTGTCCGGATTTGTAGTTGGGTGGATAATGCTGTTCAGAGGAGAG AACGGAAACGACCACTGCAGCTGGTGTCATTACCTAAGCTGTGTCCCTACTTCCAAATGGAACTGTCAGCGCTGA
AA sequence Show only first row Show all	>Lus10017840 pacid=23148822 polypeptide=Lus10017840 locus=Lus10017840.g ID=Lus10017840.BGIv1.0 annot-version=v1.0 MAPVDLERGSKNGGGDTNNRSLTPYYVDTSEKKWTSWLVPMFVLANVAVFIIAMYVNNCPRDNIGFKGNCVARFLGRLSFQPLRENPLFGPSSTTLEKIG ALEWDKVVHKHQGWRLVTCMWLHAGVIHLLANMLSLVFIGIRLEQQFGFLRVGVIYLISGLGGSILSALFIQKNISVGASGALFGLLGAMLSELLTNWTI YSNKIAALVTLLVIIAINLAIGILPHVDNFAHIGGFLAGFLLGFVFLVRPQFGWVKSRHLPPGAHVKSKHKAYQYVLWVVAAVLLVSGFVVGWIMLFRGE NGNDHCSWCHYLSCVPTSKWNCQR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63120		ATRBL2	RHOMBOID-like 2 (.1)		Lus10017840 [exp]	0	1
AT1G63120		ATRBL2	RHOMBOID-like 2 (.1)		Lus10024497 [exp]	1.0	0.9817
AT1G70500			Pectin lyase-like superfamily ...		Lus10030888 [exp]	7.1	0.9598
					Lus10006423 [exp]	8.8	0.9586
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10015737 [exp]	10.4	0.9520
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Lus10041338 [exp]	10.8	0.9564
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029980 [exp]	11.4	0.9475
AT1G76250			unknown protein		Lus10012274 [exp]	11.8	0.9552
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10034439 [exp]	12.4	0.9423
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10003468 [exp]	13.0	0.9450
AT2G23810		TET8	tetraspanin8 (.1)		Lus10018792 [exp]	13.4	0.9254

Compare expression of checked genes

Lus10017840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.