Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23060 140 / 3e-36 IQD22 IQ-domain 22 (.1) AT5G62070 56 / 5e-08 IQD23 IQ-domain 23 (.1) AT5G07240 52 / 6e-07 IQD24 IQ-domain 24 (.1) AT4G14750 44 / 0.0002 IQD19 IQ-domain 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024498 [exp] 466 / 1e-163 AT4G23060 195 / 4e-58 IQ-domain 22 (.1) Lus10024499 [exp] 68 / 1e-13 AT4G23060 48 / 4e-07 IQ-domain 22 (.1) Lus10006613 [exp] 71 / 6e-13 AT4G14750 295 / 6e-96 IQ-domain 19 (.1) Lus10021904 [exp] 56 / 3e-08 AT4G14750 314 / 2e-103 IQ-domain 19 (.1) Lus10041188 [exp] 53 / 4e-07 AT4G14750 288 / 2e-93 IQ-domain 19 (.1) Lus10027435 [exp] 50 / 3e-06 AT5G62070 207 / 3e-62 IQ-domain 23 (.1) Lus10005760 [exp] 49 / 6e-06 AT5G07240 219 / 3e-67 IQ-domain 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G108800 [exp] 281 / 3e-89 AT4G23060 179 / 1e-50 IQ-domain 22 (.1) Potri.003G122800 [exp] 270 / 6e-85 AT4G23060 109 / 1e-25 IQ-domain 22 (.1) Potri.012G139800 [exp] 116 / 4e-28 AT5G07240 137 / 3e-36 IQ-domain 24 (.1) Potri.015G142200 [exp] 106 / 1e-24 AT5G07240 138 / 3e-36 IQ-domain 24 (.1) Potri.008G156700 [exp] 69 / 2e-12 AT4G14750 307 / 6e-101 IQ-domain 19 (.1) Potri.010G082600 [exp] 61 / 1e-09 AT4G14750 261 / 2e-83 IQ-domain 19 (.1) Potri.013G038901 [exp] 48 / 1e-05 AT4G14750 128 / 2e-33 IQ-domain 19 (.1) Potri.005G051500 [exp] 48 / 1e-05 AT4G14750 127 / 6e-33 IQ-domain 19 (.1) Potri.001G190500 [exp] 47 / 2e-05 AT3G16490 293 / 5e-96 IQ-domain 26 (.1) Potri.003G047800 [exp] 46 / 3e-05 AT3G16490 299 / 1e-98 IQ-domain 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10017841 pacid=23148824 polypeptide=Lus10017841 locus=Lus10017841.g ID=Lus10017841.BGIv1.0 annot-version=v1.0 ATGGGAAAAGCTTCCCGTTGGATCCGTTCCGTTCTCGGCCTCAAAAAGTCCGATCAGTCCTCCTTCCCCACCACCACTACTACCCCCAGCACTCGTCCCA AGGAGAAACGCCGTTGGAGTTTTGTTAAATCCTACCGCGACAAAGACCACCACTCTCGCGACGCTTCCGCTTTCTCCTCCTCCTCCTTCGTCAATGCCGT CCCGGAAACCCATGAAAACGACGACGAGCAGCAGGAGGAGAATCCCGACCACCGTGCAATCGCCGTTGCCGCTGCCACTGCCGCGGTTGCCGAGGCAGCT GTGGCCGCTGCCCACGCTGCTGCCGAGGTCGTACGCCTTACCAGCAGCGGCAGGTCCGCTGGAAACGGCGTAGTAAGCTACTCGTCGGCGGCGTACGTCA GTGGGAGCCTCGGGCTGCGTGAAGATTTCGCCGCGTTGAAGATCCAGGCTGCTTTCCGAGGCTACTTGGCTAGGAGAGCTCTGAAAGCGTTAAAAGCACT GGTTAGGCTACAGGCATTGGTAAGAGGTCACATCCAAAGGAAGAGAAGGCTACAACAGATGCAGGCTGTGTTGCTGGCTCAGGCACGGGCCCGAGTTGGA CGCATTCATGCTTCCGAATCGTCCCATTCCAGCGGCGGAAAATCTTCTCACTCTCACTACTACCACCACCACCATAATCCTGGTCCAGCAACCCCTGAAA AGATAGAACATGGCATCAGGACTAAGAGTGGGAAATATGAACCTTCATCATTGCTTAAGAGGACTGGGTCAAGATCCAATGACAACAAAGCACATTCATC CCTAAGAAAGTCAGAAACTCGATCTGTGGAGCTGTCATGGGACCAGCACCAGCAGCAAGGGCCAATGGAAGAGGAAAAGAACAGTGACAAGATCCTTGAA ATCGATAATGGAGGAGGAAAGCACCACTATTTCGGTCATAAACGAAGGAACATGTTTCACTCTGCCAATCTGGGCTTCTTTTCTGACCAGTATAGCCACA GCTTCACTACGTCCAAGGACACGGCTCCAAGTCCATCCTCCGAGGAAGTTCAGTCCATGTACCCTCCCGAGTTCGATCAGGAAGTCTACTGCACGGCAGA GAACAGTCCACAACTGTTTTCTGCAACATCATCAAGAGGCGGGAAGAGAAGTCCATTCACTCCCGCAAGGAGTGACGGATCGAGAAGCTTTTTGAGCGCT TTCGCAGACCATCCTAACTACATGTCGTACACTGAATCTACAAGGGCTAAAGCAAGGTCTCTGAGTGCTCCGAAGCAGAGGCCTCACTACGAGCGTTCGA TTTCTGCAAAGAGATTCTCTGTTAATAATGGGTATGGTGAACCTAGATCGAGCAGCGCTCAGAGGGCTTCTGCTGTTCGAGCTAGCTTCTCTAGCAAAGC TTACCCTGGTTCGGGTCGACTAGATAGCCTGGGATTGCCCATGTGGCAGAAATGCTAG
AA sequence Show only first row Show all	>Lus10017841 pacid=23148824 polypeptide=Lus10017841 locus=Lus10017841.g ID=Lus10017841.BGIv1.0 annot-version=v1.0 MGKASRWIRSVLGLKKSDQSSFPTTTTTPSTRPKEKRRWSFVKSYRDKDHHSRDASAFSSSSFVNAVPETHENDDEQQEENPDHRAIAVAAATAAVAEAA VAAAHAAAEVVRLTSSGRSAGNGVVSYSSAAYVSGSLGLREDFAALKIQAAFRGYLARRALKALKALVRLQALVRGHIQRKRRLQQMQAVLLAQARARVG RIHASESSHSSGGKSSHSHYYHHHHNPGPATPEKIEHGIRTKSGKYEPSSLLKRTGSRSNDNKAHSSLRKSETRSVELSWDQHQQQGPMEEEKNSDKILE IDNGGGKHHYFGHKRRNMFHSANLGFFSDQYSHSFTTSKDTAPSPSSEEVQSMYPPEFDQEVYCTAENSPQLFSATSSRGGKRSPFTPARSDGSRSFLSA FADHPNYMSYTESTRAKARSLSAPKQRPHYERSISAKRFSVNNGYGEPRSSSAQRASAVRASFSSKAYPGSGRLDSLGLPMWQKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23060		IQD22	IQ-domain 22 (.1)		Lus10017841 [exp]	0	1
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10015637 [exp]	4.7	0.8307
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Lus10021708 [exp]	6.7	0.8096
AT1G50660			unknown protein		Lus10043111 [exp]	6.7	0.8216
AT4G23060		IQD22	IQ-domain 22 (.1)		Lus10024498 [exp]	7.4	0.7762
AT1G26750			unknown protein		Lus10031376 [exp]	9.2	0.7966
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10037655 [exp]	10.4	0.8271
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Lus10004398 [exp]	11.5	0.7303
AT3G29310			calmodulin-binding protein-rel...		Lus10026469 [exp]	12.0	0.7362
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10004455 [exp]	14.3	0.8197
AT1G74240			Mitochondrial substrate carrie...		Lus10017849 [exp]	14.4	0.7801

Compare expression of checked genes

Lus10017841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.