Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005026 [exp] 140 / 1e-43 ND / Lus10022156 [exp] 138 / 4e-42 ND / Lus10005607 [exp] 123 / 3e-36 ND 38 / 0.003 Lus10006476 [exp] 122 / 3e-36 ND / Lus10025366 [exp] 105 / 4e-30 ND / Lus10012388 [exp] 100 / 1e-27 ND / Lus10043004 [exp] 100 / 8e-26 ND 47 / 8e-06 Lus10019613 [exp] 96 / 8e-26 ND / Lus10030121 [exp] 94 / 1e-25 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03004 [flax] [poplar] Transposase_24 Plant transposase (Ptta/En/Spm family)
Representative CDS sequence Show only first row Show all	>Lus10017842 pacid=23148828 polypeptide=Lus10017842 locus=Lus10017842.g ID=Lus10017842.BGIv1.0 annot-version=v1.0 ATGGCACAACACTGGAAGACTTGGGATGTTGAGGTACTAACCCTTGAGGGCGGTAGGGTGAGGAAGTCTATTGCTAGTGCACAGATGCTTACCCTTGATC TTGGAATGAGGGCATTAGCTGAGAAGAATGCTGCAAGCAGAGCTGCTTTTGATGCACCACCACACACTAGTGGCTCCAAGAAGCTGTTGGTTAGAGGATT GGAAATTAGGGAAAGAACCGGTCAAGCACCAAGTAGGGGTGAGTTGTATGCTCAAACTCACACGAAGAAAACTGGGGAATATACCGATCCACAAGTGCCT CAGATTATTGAGTTTGACAACACCCCAGAAGTTCCCAAGCATGTCGCCCCTAACGATTTGCTTGGCCGTGTCAAAGGAGCTGAGCATAGTGGTTGA
AA sequence Show only first row Show all	>Lus10017842 pacid=23148828 polypeptide=Lus10017842 locus=Lus10017842.g ID=Lus10017842.BGIv1.0 annot-version=v1.0 MAQHWKTWDVEVLTLEGGRVRKSIASAQMLTLDLGMRALAEKNAASRAAFDAPPHTSGSKKLLVRGLEIRERTGQAPSRGELYAQTHTKKTGEYTDPQVP QIIEFDNTPEVPKHVAPNDLLGRVKGAEHSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10017842 [exp]	0	1
					Lus10003272 [exp]	3.9	1.0000
					Lus10010826 [exp]	5.5	1.0000
					Lus10022108 [exp]	6.7	1.0000
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023893 [exp]	7.7	1.0000
AT3G47090			Leucine-rich repeat protein ki...		Lus10028479 [exp]	8.7	1.0000
					Lus10030783 [exp]	9.5	1.0000
					Lus10036152 [exp]	10.6	1.0000
					Lus10037861 [exp]	11.3	1.0000
					Lus10003443 [exp]	11.7	0.8475
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10037952 [exp]	12.0	1.0000

Compare expression of checked genes

Lus10017842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.