Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23050 401 / 5e-129 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT5G49470 341 / 4e-109 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT1G67890 337 / 3e-104 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT3G06620 336 / 6e-104 PAS domain-containing protein tyrosine kinase family protein (.1) AT3G06640 325 / 3e-100 PAS domain-containing protein tyrosine kinase family protein (.1) AT3G06630 318 / 4e-98 protein kinase family protein (.1) AT5G11850 321 / 4e-97 Protein kinase superfamily protein (.1) AT1G18160 318 / 4e-95 Protein kinase superfamily protein (.1) AT1G73660 317 / 2e-94 protein tyrosine kinase family protein (.1) AT1G08720 313 / 9e-94 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024502 [exp] 1062 / 0 AT4G23050 579 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10016912 [exp] 359 / 9e-113 AT1G67890 848 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10037772 [exp] 358 / 8e-112 AT3G06620 919 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1) Lus10040540 [exp] 343 / 1e-106 AT3G06620 858 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1) Lus10027247 [exp] 319 / 9e-96 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1) Lus10031341 [exp] 315 / 3e-95 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10000937 [exp] 312 / 4e-94 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10004124 [exp] 311 / 1e-93 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10023865 [exp] 306 / 5e-92 AT5G03730 1041 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G122700 [exp] 441 / 8e-145 AT4G23050 606 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Potri.010G146000 [exp] 362 / 1e-113 AT3G06620 953 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1) Potri.008G105100 [exp] 360 / 6e-113 AT5G49470 948 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) Potri.015G040100 [exp] 319 / 5e-95 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.006G229400 [exp] 317 / 5e-95 AT5G11850 520 / 2e-170 Protein kinase superfamily protein (.1) Potri.005G047600 [exp] 314 / 5e-94 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.013G034800 [exp] 313 / 1e-93 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.018G053800 [exp] 311 / 5e-93 AT5G11850 517 / 2e-169 Protein kinase superfamily protein (.1) Potri.012G048400 [exp] 313 / 7e-93 AT1G73660 1065 / 0.0 protein tyrosine kinase family protein (.1) Potri.016G095750 [exp] 300 / 9e-90 AT5G03730 970 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10017844 pacid=23148792 polypeptide=Lus10017844 locus=Lus10017844.g ID=Lus10017844.BGIv1.0 annot-version=v1.0 ATGGCTCCTTCAAGCCGGCAAAAGACACGCGGCGCCAATACGCTATGGCTCCTTCAAGCCGGCAAAAGACACGCGGCGCCAATACGCTATGGCTCCTTCA AGCCGGCAAAAGACACGCGGCGCCAATACGCTATGGCTCCTTCAAGCCGGCAAAAGACACGCGGCGCCAATACGCTATGGCTCCTTCAAGCCGGCAAAAG ACACGCGGCGCCAATACGCTATGGCTCCTTCAAGCCGGCAAAAGACACGCGGCGCCAATACGCTATGGCTCCTTCAAGCCGGCAAAAGACACGCGGCGCC AATACGCTATGGCTCCTTCAAGCCGGCAAAAGACACGCGGCGCCAATACGCTATGGCTCCTTCAAGCCGGCAAAAGACACGCGGCGCCAATACGCTATGG CTCCTTCAAGCCGGCAAAAGACACGCGGCGCCAATCTACCAACACTCTCCTCCTCACTCGTTTCTTCGGAAATGCTGTACGGTTGGAATGTAAACGAGGT GATCGGGGAGAGAATTGCAACGCTTCTTGTAGCTGAAGAGTACCATGCTTCCTTTAGGAAAATCTTAGGGAATCTGAGCTTTGGGCGTTTGTGGTCAGGT CAGTTCCCTTTTAGTAAGAAATCAGGGGAAGTGTTTATGGCCTTGGTCACCATGAGTTTAATGTACGAGGGTAATGAGCTTGCTGGTATCGTCACGGTTT CAAGTGATGCCACAGTGTTCAATAAGACAAAGCTCGGAAACCTGAACCGTGGTAGTGATAAAGAAGGGCCAAACTCCAGCAAGATTCAGTGGCAGCACCG CCCAGCCATTGCATCGTCAGTTTCTAATCTGGCTTCGAGATTCTTACCAAAAAAGCGTGGTGATGAGGGTTCTGATGCCCATGTTGGTGGTAAGCCTGAC GAATATTCTAAGGCGAGCATCCAGGATTCACTTGACACAAGAGGTTGTACTAACTATCACCAAAATGGCAAGAATTCCGCCAATCGAAAGAACCCTCCTA AAATCCTGCTACAGACAGCTAAATTGTTTGGGAATCTGAAATTGGGAGGATTCAATGGTAATGGTCACAAAGATGAAGAAAACGGTCAACCATATTCCCA AAGCGAAAATTTTGTCAACAATGGGGCCTCCAAAAATAATAATCACCCTCGAAGACGAAGGGTGTCTGAGGTGGAAACAAAGAGTAATGCTGTACGGGAA GGAAATTCATCTGATGCTCTTAACAATGACTTGCTTATTTCTGCGAGGAAAAATCCATATGCTTCTCAAGAAATCTGTGTGTCAACCTATATGGAGGAAA TAAATCAATTCAATCTGCTGGAGGAGCCAGAGCCAGTCCAGGAAACTCAAGAAGATGAAGAAGATAGAAGAACAGATGGCAAGCAGAGCAGTGGCAGTCA TGGAAGTTCATCAAGTAAGGGGAACAATGAGTTGAGTTCAAAGGTAGATTGTGGAATTCAGTGGGAGGACCTTCGGTTAGCAGAGGAGATTGGGCAAGGT GCGTTTGCTGTTGTTTATCGTGCAATCTGGAATGGATCGGTGAGATTGCTTGCTACGGATGTTGCAGTCAAGGTTTATTTTGCTAATGATTACAAGGAAG AAACGTTACTAGATTACAAGAAAGAGATTAATATGATGAAGAGGCTTAGACACCCGAATGTGTTGCTTTTTATGGGAGCGGTGTATTCACCAGAACGAAT GGCCATGGTCACAGAGTTATTGCCAAGGGGAAGCCTTTTCAAGACACTTCACAAAAACAATCAGGCTTTAGATATTAAAAAACGGCTGAAGATGGCCCTT GACGTTACTAGAGGGATGAATTACTTGCATCGTAGAAATCCGCCTATTGTGCACAGAGATCTAAAATCTTCTAACCTGCTCGTTGACAAAAACTGGAATG TCAAGGTTGGGGACTTTGGTCTGTCAAGGTGGAAGCATGCAACCTTCTTGACTGCAAGATCAGGAACAGGAACGCCTCAATGGATGGCCCCGGAGGTCCT GCGAAATGATCCATCAGACGAAAAGTCTGATGTGTACAGTTTTGGAGTGATCTTGTGGGAACTAATGACGGTCTCCGTTCCATGGTATAAACTCAACTCC ATGCAGGTTGTTGGAGTTGTAGGCTTCATGGACAGAAGACTGGAATTGCCAGATGATCTTGATCCCAATATAGCATCCATTATCTGCGACTGCTGGAAGA GTGATCCAAAGCAGCGGCCGTCGTTCGAAGACCTGATTCACCAAATGACAAGCATCATTCAGGGAGTTGTAACAGCTCCAGCTCAGAGGGCTGTGAAATA G
AA sequence Show only first row Show all	>Lus10017844 pacid=23148792 polypeptide=Lus10017844 locus=Lus10017844.g ID=Lus10017844.BGIv1.0 annot-version=v1.0 MAPSSRQKTRGANTLWLLQAGKRHAAPIRYGSFKPAKDTRRQYAMAPSSRQKTRGANTLWLLQAGKRHAAPIRYGSFKPAKDTRRQYAMAPSSRQKTRGA NTLWLLQAGKRHAAPIRYGSFKPAKDTRRQYAMAPSSRQKTRGANLPTLSSSLVSSEMLYGWNVNEVIGERIATLLVAEEYHASFRKILGNLSFGRLWSG QFPFSKKSGEVFMALVTMSLMYEGNELAGIVTVSSDATVFNKTKLGNLNRGSDKEGPNSSKIQWQHRPAIASSVSNLASRFLPKKRGDEGSDAHVGGKPD EYSKASIQDSLDTRGCTNYHQNGKNSANRKNPPKILLQTAKLFGNLKLGGFNGNGHKDEENGQPYSQSENFVNNGASKNNNHPRRRRVSEVETKSNAVRE GNSSDALNNDLLISARKNPYASQEICVSTYMEEINQFNLLEEPEPVQETQEDEEDRRTDGKQSSGSHGSSSSKGNNELSSKVDCGIQWEDLRLAEEIGQG AFAVVYRAIWNGSVRLLATDVAVKVYFANDYKEETLLDYKKEINMMKRLRHPNVLLFMGAVYSPERMAMVTELLPRGSLFKTLHKNNQALDIKKRLKMAL DVTRGMNYLHRRNPPIVHRDLKSSNLLVDKNWNVKVGDFGLSRWKHATFLTARSGTGTPQWMAPEVLRNDPSDEKSDVYSFGVILWELMTVSVPWYKLNS MQVVGVVGFMDRRLELPDDLDPNIASIICDCWKSDPKQRPSFEDLIHQMTSIIQGVVTAPAQRAVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23050			PAS domain-containing protein ...		Lus10017844 [exp]	0	1
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10032646 [exp]	3.9	0.9335
AT1G68940			Armadillo/beta-catenin-like re...		Lus10029113 [exp]	7.4	0.9246
AT4G10970			unknown protein		Lus10023075 [exp]	7.5	0.9311
AT5G57500			Galactosyltransferase family p...		Lus10000372 [exp]	9.2	0.9233
					Lus10040954 [exp]	9.5	0.9194
AT5G36930			Disease resistance protein (TI...		Lus10018972 [exp]	9.8	0.8958
					Lus10034398 [exp]	9.9	0.9271
AT1G68940			Armadillo/beta-catenin-like re...		Lus10029112 [exp]	10.8	0.9269
AT3G16230			Predicted eukaryotic LigT (.1....		Lus10006828 [exp]	11.7	0.9178
AT4G14180		ATPRD1	putative recombination initiat...		Lus10003912 [exp]	11.9	0.8598

Compare expression of checked genes

Lus10017844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.