Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61060 838 / 0 HDA5, HDA05, ATHDA5 histone deacetylase 5 (.1.2) AT5G61070 499 / 1e-168 HDA18, ATHDA18 A. THALIANA HISTONE DEACETYLASE OF THE RPD3/HDA1 SUPERFAMILY 18, histone deacetylase of the RPD3/HDA1 superfamily 18 (.1) AT5G61050 278 / 9e-89 histone deacetylase-related / HD-related (.1) AT3G18520 239 / 2e-70 HDA15, ATHDA15 histone deacetylase 15 (.1.2) AT4G33470 140 / 9e-36 HDA14, ATHDA14 histone deacetylase 14 (.1) AT1G08460 129 / 2e-32 HDA8, HDA08, ATHDA8 histone deacetylase 8 (.1) AT4G38130 101 / 1e-22 ATHDA19, ATHD1, RPD3A, HDA19, HD1 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) AT5G63110 91 / 3e-19 RPD3B, CAT1, AXE1, ATHDA6, SIL1, RTS1, HDA6 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) AT3G44680 77 / 1e-14 HDA09, HDA9 histone deacetylase 9 (.1) AT5G26040 59 / 4e-09 HDA2 histone deacetylase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034689 [exp] 1219 / 0 AT5G61060 876 / 0.0 histone deacetylase 5 (.1.2) Lus10024919 [exp] 222 / 2e-64 AT3G18520 622 / 0.0 histone deacetylase 15 (.1.2) Lus10022906 [exp] 219 / 1e-62 AT3G18520 582 / 0.0 histone deacetylase 15 (.1.2) Lus10010889 [exp] 149 / 7e-39 AT4G33470 610 / 0.0 histone deacetylase 14 (.1) Lus10001850 [exp] 131 / 6e-33 AT1G08460 558 / 0.0 histone deacetylase 8 (.1) Lus10013343 [exp] 130 / 9e-33 AT1G08460 559 / 0.0 histone deacetylase 8 (.1) Lus10001605 [exp] 100 / 1e-21 AT4G38130 833 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10019486 [exp] 91 / 7e-19 AT5G63110 727 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10043337 [exp] 87 / 6e-18 AT5G63110 629 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G092900 [exp] 938 / 0 AT5G61060 915 / 0.0 histone deacetylase 5 (.1.2) Potri.012G060400 [exp] 226 / 3e-65 AT3G18520 637 / 0.0 histone deacetylase 15 (.1.2) Potri.005G064200 [exp] 140 / 9e-36 AT4G33470 622 / 0.0 histone deacetylase 14 (.1) Potri.009G020500 [exp] 127 / 1e-31 AT1G08460 552 / 0.0 histone deacetylase 8 (.1) Potri.004G209800 [exp] 94 / 4e-20 AT4G38130 815 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.009G170700 [exp] 92 / 2e-19 AT4G38130 811 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.015G082500 [exp] 87 / 1e-17 AT5G63110 728 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.012G083800 [exp] 84 / 5e-17 AT5G63110 716 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.001G460000 [exp] 72 / 6e-13 AT3G44680 739 / 0.0 histone deacetylase 9 (.1) Potri.006G230300 [exp] 68 / 7e-12 AT5G26040 575 / 0.0 histone deacetylase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0302 [flax] [poplar] Arginase PF00850 [flax] [poplar] Hist_deacetyl Histone deacetylase domain
Representative CDS sequence Show only first row Show all	>Lus10017845 pacid=23148817 polypeptide=Lus10017845 locus=Lus10017845.g ID=Lus10017845.BGIv1.0 annot-version=v1.0 ATGGGGGATGTGACGGGTTCTGACATAATAAGCAAGACGAGCAGCAATCAAAGCCGAGTTGGGCTTCTGTATGACGAGCGGATGTGTAATCATTGCACTC CTGATGGCGAAGATCATCCTGAAAATCCCAGTCGAATTAGGTCTATCTGGAGCAAGCTCCAAGCCAAGGGCATCCCCCAAAGGTGTGTCCATCTGGATGC CAAAATGGCTGAAGACAAACATTTACTTGCCGTTCATTCCCAGAGACATGTTGATTTGATTAAAAACATAAGCTCCAAAACCTTCTACTCGAGAAACAGG CTAGCTGCGAGGCTGAATTCCATATATTTCAACGAGGGATCATCTGAAGCTGCTTACTTGGCTGCTGGTTCTGTTGTAGAGGTGGCTGAGAAAGTTGCCA AAGGGGAGGTGGATTCTGCCGCTGCTATTGTTAGGCCACCTGGTCATCATGCTGAACATGATGAAGCAATGGGATTTTGTCTTTTCAATAATGTTGCAGT TGCAGCTAGATTTCTTTTGGATGAAAAGCCAGAATTGGGCATAAAAAAGATTTTGATTGTTGACTGGGATGTGCATCATGGAAACGGCACTCAGAAGATG TTTTGGTCAGATTCCCGAGTGCTGTTTTTCTCCGTTCACAGGCATGAGTTTGGTTCATTTTACCCAGCCAACGATGATGGCTTCTACACTAATGTGGGTG AAGGTGCAGGTGAAGGGTATAATATAAATGTTCCCTGGGAGAACGGAAGATGTGGAGATTCAGACTATCTTGCTGTTTGGGACCATGTATTGGTCCCCGT CGCTAAGGAATTTGATCCTGACATTATTATAGTGTCTGCAGGATTTGATGCAGCTCTTAAGAACTCTGATCTGCAAATTCGTGATAAATTCCCTAGTCAC AGCTCACATAAAGAAAAGCCTTTGACGGATCTCACTGATTGTTTCCGATTGCTTTCAGCTGCTGGAGATCCTTTAGGTGGTTGCTGTATCACACCTTATG GATATTCAGTAATGCTGGAAAAGCTGATGGATTTTGCCAATGGAAAAGTAGTTTTGGCATTTGAAGGGGGCTACAATCTTGATTCTATAGCAAGTTCATT CCTTGCTTGCATGGAGGTGCTACTCGAACGTAAGCGCATTGAAGGATCTTCAGAGGCCTGTCCATTTGAATCTACTTGGCATGTAATAAACGAGGTTCGC AAGAAATTGTGTGTTTACTGGCCTGTGCTTGCAGATGAATTACCATCAACGTTAACAAGCAAAAAAGCTCCATCTCCACATTTTTTTGTCTCAAGCTCTG ACACTGAAGCTGAGGATGAAAACACATCTGTATCAGAAAAAATCGAGGCGGCTCTTCAGAAAGTTATGGAACCATTTTCGAAGCTGACAGTTGAAGATCA TCCAGATGGGACTGCATCGTGTGCCCCTTGGAGGCCAGTTCTTTCGAAGACTGATATTTGGTATGCTACATTTGGATCAAACATGTGGCAGTCGAGATTT CGATGTTATATTGAAGGCGGCCGGGTCGAAGGGATGCAGAAGCCATGTGCTGGTTCAGCGGATAAACAGCCACCGAAAGATATCATTTGGAAAACATTCC CCCACAGATTATTCTTCGGTCACGAGTCTACGAGGACATGGGGACCAGGAGGAGTTGCTTTCCTTCATCTAGAAAGTAGCAGTGATGAAAAAACACAGAT GTGCCTATATAGAATCACGCTAGAGCAATTCAATGATGTTCTGCTTCAGGAAAATGTCTCCAGTCACAACATGAGCTCTCCTGTGTTCGATTTAACTGAT TTGAATACTGCAGAGAACCAAGGATCAATCCCTCTGGAGGTTTTCAAGAATGGTTGGTACCATAATGTGGTTTACTTGGGAAAGGAACACGGTCTTCCTA TTCTGACCATGACGTGCACAGTGTCGGATGTGGAGAAGTTTCGAGGTGGGGAGTTCCCTTTGCGAGCTCCATGCAAAGAGTATGCTAACACCTTAGTAAG GGGACTGGTTGAAGGAGGACAGTTATCAGAAGAGGAAGCCAATGCTTACATAGAAAGAGCTTCTGGAAAGCCAATCTGA
AA sequence Show only first row Show all	>Lus10017845 pacid=23148817 polypeptide=Lus10017845 locus=Lus10017845.g ID=Lus10017845.BGIv1.0 annot-version=v1.0 MGDVTGSDIISKTSSNQSRVGLLYDERMCNHCTPDGEDHPENPSRIRSIWSKLQAKGIPQRCVHLDAKMAEDKHLLAVHSQRHVDLIKNISSKTFYSRNR LAARLNSIYFNEGSSEAAYLAAGSVVEVAEKVAKGEVDSAAAIVRPPGHHAEHDEAMGFCLFNNVAVAARFLLDEKPELGIKKILIVDWDVHHGNGTQKM FWSDSRVLFFSVHRHEFGSFYPANDDGFYTNVGEGAGEGYNINVPWENGRCGDSDYLAVWDHVLVPVAKEFDPDIIIVSAGFDAALKNSDLQIRDKFPSH SSHKEKPLTDLTDCFRLLSAAGDPLGGCCITPYGYSVMLEKLMDFANGKVVLAFEGGYNLDSIASSFLACMEVLLERKRIEGSSEACPFESTWHVINEVR KKLCVYWPVLADELPSTLTSKKAPSPHFFVSSSDTEAEDENTSVSEKIEAALQKVMEPFSKLTVEDHPDGTASCAPWRPVLSKTDIWYATFGSNMWQSRF RCYIEGGRVEGMQKPCAGSADKQPPKDIIWKTFPHRLFFGHESTRTWGPGGVAFLHLESSSDEKTQMCLYRITLEQFNDVLLQENVSSHNMSSPVFDLTD LNTAENQGSIPLEVFKNGWYHNVVYLGKEHGLPILTMTCTVSDVEKFRGGEFPLRAPCKEYANTLVRGLVEGGQLSEEEANAYIERASGKPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Lus10017845 [exp]	0	1
AT1G17680			tetratricopeptide repeat (TPR)...		Lus10042212 [exp]	2.4	0.8541
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10017983 [exp]	5.3	0.8257
AT1G08680		ZIGA4, AGD14	ARF-GAP domain 14, ARF GAP-lik...		Lus10005686 [exp]	16.5	0.7309
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10014045 [exp]	17.2	0.7996
AT2G16950		ATTRN1	transportin 1 (.1.2)		Lus10023999 [exp]	17.7	0.7982
AT2G36720			Acyl-CoA N-acyltransferase wit...		Lus10035553 [exp]	18.0	0.7810
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10039795 [exp]	20.5	0.7725
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10017098 [exp]	20.8	0.7819
AT2G26780			ARM repeat superfamily protein...		Lus10036052 [exp]	21.0	0.7897
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10034780 [exp]	21.8	0.7861

Compare expression of checked genes

Lus10017845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.