Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74250 402 / 2e-132 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G56300 67 / 5e-13 Chaperone DnaJ-domain superfamily protein (.1) AT3G11450 71 / 1e-12 DnaJ domain ;Myb-like DNA-binding domain (.1) AT1G71000 64 / 9e-12 Chaperone DnaJ-domain superfamily protein (.1) AT1G68370 65 / 6e-11 ARG1 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) AT1G59980 65 / 7e-11 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT1G80030 63 / 3e-10 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT2G33735 57 / 6e-10 Chaperone DnaJ-domain superfamily protein (.1) AT2G20560 61 / 1e-09 DNAJ heat shock family protein (.1) AT3G08910 61 / 1e-09 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034688 [exp] 840 / 0 AT1G74250 468 / 5e-158 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10022344 [exp] 197 / 9e-58 AT1G74250 204 / 5e-61 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10012524 [exp] 153 / 8e-41 AT1G74250 142 / 3e-37 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10026919 [exp] 76 / 4e-14 AT5G06110 752 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10020118 [exp] 76 / 6e-14 AT5G06110 749 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10020117 [exp] 75 / 9e-14 AT5G06110 736 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10029862 [exp] 69 / 2e-13 AT1G56300 201 / 9e-67 Chaperone DnaJ-domain superfamily protein (.1) Lus10020685 [exp] 69 / 2e-13 AT1G56300 200 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1) Lus10026920 [exp] 71 / 1e-12 AT5G06110 681 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G018400 [exp] 441 / 2e-148 AT1G74250 460 / 2e-155 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G190000 [exp] 75 / 6e-14 AT3G11450 663 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1) Potri.010G113400 [exp] 70 / 2e-13 AT1G71000 148 / 2e-45 Chaperone DnaJ-domain superfamily protein (.1) Potri.001G035800 [exp] 72 / 4e-13 AT3G11450 679 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1) Potri.005G020300 [exp] 67 / 6e-13 AT1G56300 217 / 2e-73 Chaperone DnaJ-domain superfamily protein (.1) Potri.013G010800 [exp] 63 / 2e-11 AT1G56300 200 / 9e-67 Chaperone DnaJ-domain superfamily protein (.1) Potri.008G123200 [exp] 66 / 4e-11 AT1G68370 670 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.002G198000 [exp] 65 / 4e-11 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.010G122300 [exp] 64 / 1e-10 AT1G68370 671 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.009G015700 [exp] 64 / 2e-10 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF12171 [flax] [poplar] zf-C2H2_jaz Zinc-finger double-stranded RNA-binding CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10017846 pacid=23148787 polypeptide=Lus10017846 locus=Lus10017846.g ID=Lus10017846.BGIv1.0 annot-version=v1.0 ATGGCGTCCTCGGCTTCGGCGGCGGCGACGAAGCGATGCTACTACGAGGTGCTTGGAATATCGCAGGACTCAAGCCCCGACGAAATAAAGTCCGCTTACA AGAAGCTCGCTCTCCAGCGCCATCCGGACAAGCTCATGCGATCCGGGATAAGCGAAGCCGACGCCACAGCTCAGTTCCAGGAGCTGGTTCACGCGTACGA GGTCCTCTCCGACGCCAAGGAGCGTGCTTGGTACGATACTCACCGCAATCCGATCCTTTTCTCCGACCGTAGCTCTGCCAGCTCCGCCCCATCTATCCCC GATTTATCCTCCTTCTTCTCGAACACGGTATACTCTGGCTACACAGATAAGGGCAAAGGATTTTACAAAGTGTACTCCGACGTGTTCAATAAGATTTACG CGAACGAGGTCAGTTTTTGTAAGAGATTTGGGATAGGGTTTGATTATTTGAAGGAGGCGCCGTTGATGGGGAATTCGGAGAGTCCGTACAAGCAGGTGAC TGCTTTTTATGGTTATTGGTTGGGGTTTAACTCAATTATGGATTTCTGTTGGGCGGATCAGTACGACGTGATGGCTGGTCCTGACCGGAGGTCTCGGCGG ATGATGGAGGAGGAGAATAAGAAGGTGAGGAAGAAGGCGAAGAGGGAGTTTAACGATACGGTGAGGGGGTTGGCGGAGTTTGTGAAGAAGAGGGATAAGA GAGTGATCGATATGATGGCTAAGAAGATTGCTGAGGCGGAGAAGAAGAAGGAAGTAGAGAGGCAGAGGAAGAAGCAGTTGGAGAGGGAAAAAATGGAAAG GATGATGGCTTACCAGGAGCCGGAATGGGCTAAAGTGGGCGAAGAAGAAGTTGTTGAGGATTTTGAAGAAGAGAATGGGGAAGAAGGGAAGCAGGAGTTG TATTGTGTGACATGTAGTAAGAAGTTCAAGAGTGATAAACAGTGGAAGAATCATGAGCAGTCTAAGAAGCACAAGGAGAAGGTTGCGCAGTTGCGAAAGT CGTTTAAGAAAGAACAGTATGTTGAAGAAGAGGATGAAGAAGAGTTTGTTGAGATTGAGGAGGAGGAGACAAGTGAGGAAAGAAACTGCAGTGTAGATGA TGATTTTGAGGAGAAGTTTGAGAAAGGGGTTACAGTTAGCGAGGAGGAGGAAGATAATGTGGTTGAGAATCTGGATGGTGAACATGAGGATGATCTCTTT TTTGATGCCGACGATTCTAATGAAGTTGAAGAGGCCAATGAGAATGCTAAGGATGATGGCTTCCCCGATGCCAATGAAACAGTAAAAGCTAATGAGAGTG ATACTAAGGATGCTGTTTCAGATGATGATGATGATGATGATCTTGATGATGGAAGGAGTGTCCTTGAAGCAATGCTGTCAGGACGCAGAGGCAAGAAAAA CCGAAGTTCTAAGGATGTATATCCGGAAGATGTTAATGAGGGTGCCAATGCTATGGATCATGGGAGTCGGAAGAGTAAGAGGAGAGCGAAGAAAGAAAAG GGAAAGAGCAATGTCGAAGAACCAGTAAGGGATTTTGCCAACGGAAGTAAGAGTACGAAGGAGGAGAAAACAGTTGGCAGTGAAGACCAAACAGACGAGT CATGTACGGATGACAATGTCGATGACATTAAGAAGGACGATCATTTGGTGAAGAACCGCAAGAGTTCTAGTCAGGGTGTCACGAAGAAGGGAACAAATTC AAAGGTCGCCCCGTCCAAAGGGAAGAAAGGAAAGGGAACATCGAACAAGAGTGCTGCCAACTCATGTGAGGTATGCGGAGAGGAATTTGAATCGAGGAAC AAGTTACATATGCACTTGGGGGAGACGGGTCATGCTTCATTGAAACGTCGATGA
AA sequence Show only first row Show all	>Lus10017846 pacid=23148787 polypeptide=Lus10017846 locus=Lus10017846.g ID=Lus10017846.BGIv1.0 annot-version=v1.0 MASSASAAATKRCYYEVLGISQDSSPDEIKSAYKKLALQRHPDKLMRSGISEADATAQFQELVHAYEVLSDAKERAWYDTHRNPILFSDRSSASSAPSIP DLSSFFSNTVYSGYTDKGKGFYKVYSDVFNKIYANEVSFCKRFGIGFDYLKEAPLMGNSESPYKQVTAFYGYWLGFNSIMDFCWADQYDVMAGPDRRSRR MMEEENKKVRKKAKREFNDTVRGLAEFVKKRDKRVIDMMAKKIAEAEKKKEVERQRKKQLEREKMERMMAYQEPEWAKVGEEEVVEDFEEENGEEGKQEL YCVTCSKKFKSDKQWKNHEQSKKHKEKVAQLRKSFKKEQYVEEEDEEEFVEIEEEETSEERNCSVDDDFEEKFEKGVTVSEEEEDNVVENLDGEHEDDLF FDADDSNEVEEANENAKDDGFPDANETVKANESDTKDAVSDDDDDDDLDDGRSVLEAMLSGRRGKKNRSSKDVYPEDVNEGANAMDHGSRKSKRRAKKEK GKSNVEEPVRDFANGSKSTKEEKTVGSEDQTDESCTDDNVDDIKKDDHLVKNRKSSSQGVTKKGTNSKVAPSKGKKGKGTSNKSAANSCEVCGEEFESRN KLHMHLGETGHASLKRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10017846 [exp]	0	1
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10001696 [exp]	1.0	0.9012
AT1G26550			FKBP-like peptidyl-prolyl cis-...		Lus10015714 [exp]	1.4	0.8666
AT5G40570			Surfeit locus protein 2 (SURF2...		Lus10003658 [exp]	2.4	0.8236
AT5G41020	MYB		myb family transcription facto...		Lus10022926 [exp]	4.9	0.8221
					Lus10012752 [exp]	6.9	0.7885
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10041513 [exp]	8.4	0.7900
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10023155 [exp]	8.9	0.7834
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10005161 [exp]	10.1	0.7957
AT5G41020	MYB		myb family transcription facto...		Lus10024036 [exp]	11.4	0.8173
AT5G63690			Nucleic acid-binding, OB-fold-...		Lus10035799 [exp]	12.6	0.7346

Compare expression of checked genes

Lus10017846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.