Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74240 386 / 1e-133 Mitochondrial substrate carrier family protein (.1) AT1G34065 119 / 1e-30 SAMC2 S-adenosylmethionine carrier 2 (.1) AT5G46800 113 / 9e-29 BOU A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) AT4G39460 112 / 4e-28 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) AT5G42130 107 / 8e-26 AtMfl1 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) AT4G11440 104 / 2e-24 Mitochondrial substrate carrier family protein (.1) AT2G30160 99 / 4e-23 Mitochondrial substrate carrier family protein (.1) AT2G35800 98 / 4e-22 SAMTL S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) AT2G26360 92 / 2e-20 Mitochondrial substrate carrier family protein (.1) AT2G47490 91 / 2e-20 ATNDT1 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006812 [exp] 114 / 2e-28 AT4G39460 478 / 6e-171 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10029770 [exp] 112 / 2e-27 AT5G42130 478 / 5e-169 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Lus10005787 [exp] 107 / 2e-26 AT4G39460 494 / 2e-177 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10000906 [exp] 106 / 3e-26 AT5G46800 482 / 1e-173 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Lus10004565 [exp] 104 / 1e-25 AT5G46800 481 / 2e-173 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Lus10026395 [exp] 100 / 6e-24 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1) Lus10042258 [exp] 99 / 2e-23 AT2G30160 484 / 2e-173 Mitochondrial substrate carrier family protein (.1) Lus10040375 [exp] 100 / 7e-23 AT2G35800 1066 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Lus10034104 [exp] 98 / 8e-23 AT1G25380 414 / 3e-145 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G066000 [exp] 427 / 1e-150 AT1G74240 446 / 6e-158 Mitochondrial substrate carrier family protein (.1) Potri.003G127600 [exp] 120 / 6e-30 AT4G11440 437 / 3e-146 Mitochondrial substrate carrier family protein (.1) Potri.005G197200 [exp] 115 / 3e-29 AT4G39460 417 / 3e-147 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.005G085900 [exp] 112 / 4e-28 AT4G39460 487 / 9e-175 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.005G189600 [exp] 112 / 9e-28 AT5G42130 542 / 0.0 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Potri.001G142600 [exp] 100 / 5e-24 AT5G46800 434 / 1e-154 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Potri.002G200900 [exp] 100 / 9e-24 AT2G47490 471 / 1e-168 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.001G282400 [exp] 98 / 5e-23 AT1G07030 426 / 1e-150 Mitochondrial substrate carrier family protein (.1) Potri.003G091500 [exp] 97 / 9e-23 AT5G46800 443 / 4e-158 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Potri.010G217900 [exp] 99 / 3e-22 AT2G35800 1040 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10017849 pacid=23148834 polypeptide=Lus10017849 locus=Lus10017849.g ID=Lus10017849.BGIv1.0 annot-version=v1.0 ATGGCGCCTCCTATTCCAACTCCCAACGACATAGCACTTCACCCTCACCAGTTGCTACCTTCCCCAACTCACAATCATTTCTTCGTATGGAGAGAATTCT TGTGGGGTGCCATGGCTGGGGCATTTGGAGAAGGCATGATGCATCCCGTTGATACTGTCAAGACTCGTATCCAGAGTCAAGCCATCTTTAATGCTTCACA GAGCCAAAAGAGTGTGCTGCAAATGGTTAGAGCGGTATGGATGGCTGATGGTTTAAGAGGCTTTTATAGGGGTGTAACTCCTTCTCTTACTGGATCACTT GCAACCGGAGCCACCTATTTTGGTTTCATAGAGTCTACCAAGAAGTGGATCGAAAGCTCACATCCTGGTCTTGGAGGGAATTTTTCTTACTTCATTGCTG GAGCTCTTGGAGATACAATTGGTTCTGTTGTTTACGTACCGTGTGAAGTGGTGAAGCAACGCATGCAGGTGCAAGGCACAAGAACATCTTGGACTGCTAG TGCTCTGAAAGATTGCAGCACAAATAAAGGTGGAACGTATGGATACTACACAGGAATGTTTCAGGCTGGCAGTTCAATATTGAAGGAGCAGGGCCCTAGA GGATTGTTTACAGGATATGGATCCACAATTGCAAGAGATATGCCTTTTGCTGGCCTAATGGTTATGTCCTATGAAATCCTGAAGGATTTCACAGAATATG GAAGGAAAACATGGTCCCTGAATTTGGACGAACAACTGATTAGTACCATGGAAGGACTTGTCCTAGGTGGAGTTTCAGGTGGTTTCAGTGCGTATCTCAC TACCCCTATGGACGTTATCAAGACAAGGCTGCAAGTACAAGGATCCAATCCCAGGTACACGGGATGGTTAGATGCGATTCGCAAGGTTTGGATGGTGGAA GGTGTGAAAGGGATGTTCAGAGGAAGCATCCCAAGGATAACATGGTACGTTCCAGCCTCTGCACTTACCTTCATGGCCGTGGAATTCCTGAGAGGCCAGT TCAATAAGGAAGAGATGGACGATAAGCAACAGGTTACAAGCCTGTCGATAGAGAAGAAAGCAGCATCCTTACCGGAGGTATCGTAA
AA sequence Show only first row Show all	>Lus10017849 pacid=23148834 polypeptide=Lus10017849 locus=Lus10017849.g ID=Lus10017849.BGIv1.0 annot-version=v1.0 MAPPIPTPNDIALHPHQLLPSPTHNHFFVWREFLWGAMAGAFGEGMMHPVDTVKTRIQSQAIFNASQSQKSVLQMVRAVWMADGLRGFYRGVTPSLTGSL ATGATYFGFIESTKKWIESSHPGLGGNFSYFIAGALGDTIGSVVYVPCEVVKQRMQVQGTRTSWTASALKDCSTNKGGTYGYYTGMFQAGSSILKEQGPR GLFTGYGSTIARDMPFAGLMVMSYEILKDFTEYGRKTWSLNLDEQLISTMEGLVLGGVSGGFSAYLTTPMDVIKTRLQVQGSNPRYTGWLDAIRKVWMVE GVKGMFRGSIPRITWYVPASALTFMAVEFLRGQFNKEEMDDKQQVTSLSIEKKAASLPEVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74240			Mitochondrial substrate carrie...		Lus10017849 [exp]	0	1
AT1G12790			unknown protein		Lus10003529 [exp]	1.0	0.8225
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Lus10021708 [exp]	5.7	0.8137
AT2G26470			unknown protein		Lus10038230 [exp]	8.4	0.8093
AT3G23100		XRCC4	homolog of human DNA ligase iv...		Lus10022210 [exp]	9.3	0.8168
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Lus10006264 [exp]	9.7	0.7849
AT5G50310			Galactose oxidase/kelch repeat...		Lus10040895 [exp]	12.6	0.7982
AT1G26750			unknown protein		Lus10031376 [exp]	13.3	0.7950
AT1G50660			unknown protein		Lus10043111 [exp]	13.4	0.8026
AT4G23060		IQD22	IQ-domain 22 (.1)		Lus10017841 [exp]	14.4	0.7801
AT3G11730		ATFP8, AtRABD1	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10036442 [exp]	16.7	0.8148

Compare expression of checked genes

Lus10017849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.