Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64060 610 / 0 RBOHAP108, ATRBOHF ,ATRBOH F ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) AT1G09090 586 / 0 ATRBOHB-BETA, ATRBOHB respiratory burst oxidase homolog B (.1.2) AT1G19230 572 / 0 Riboflavin synthase-like superfamily protein (.1.2) AT5G47910 566 / 0 ATRBOHD, RBOHD respiratory burst oxidase homologue D (.1) AT5G07390 559 / 0 ATRBOHA respiratory burst oxidase homolog A (.1.2) AT4G25090 534 / 7e-178 Riboflavin synthase-like superfamily protein (.1.2) AT5G51060 534 / 4e-177 ATRBOHC, RHD2 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) AT4G11230 535 / 7e-177 Riboflavin synthase-like superfamily protein (.1) AT5G60010 525 / 6e-174 ferric reductase-like transmembrane component family protein (.1) AT3G45810 501 / 2e-164 ferric reductase-like transmembrane component family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017527 [exp] 617 / 0 AT1G64060 1445 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10032308 [exp] 608 / 0 AT1G64060 1467 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10028755 [exp] 587 / 0 AT1G64060 1486 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10029896 [exp] 575 / 0 AT1G09090 1158 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10033423 [exp] 567 / 0 AT1G19230 1165 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Lus10034890 [exp] 565 / 0 AT1G19230 1181 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Lus10043017 [exp] 565 / 0 AT5G47910 1276 / 0.0 respiratory burst oxidase homologue D (.1) Lus10032517 [exp] 557 / 0 AT5G47910 1273 / 0.0 respiratory burst oxidase homologue D (.1) Lus10020644 [exp] 556 / 0 AT1G09090 1085 / 0.0 respiratory burst oxidase homolog B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G098300 [exp] 615 / 0 AT1G64060 1476 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.003G133300 [exp] 608 / 0 AT1G64060 1489 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.005G026200 [exp] 595 / 0 AT1G09090 1165 / 0.0 respiratory burst oxidase homolog B (.1.2) Potri.006G137300 [exp] 576 / 0 AT1G19230 1203 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Potri.003G159800 [exp] 575 / 0 AT5G47910 1299 / 0.0 respiratory burst oxidase homologue D (.1) Potri.001G070900 [exp] 567 / 0 AT5G47910 1227 / 0.0 respiratory burst oxidase homologue D (.1) Potri.012G111600 [exp] 562 / 0 AT5G51060 1255 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.015G109800 [exp] 558 / 0 AT5G51060 1253 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.006G097200 [exp] 493 / 4e-162 AT5G60010 1078 / 0.0 ferric reductase-like transmembrane component family protein (.1) Potri.016G112200 [exp] 478 / 3e-156 AT5G60010 1052 / 0.0 ferric reductase-like transmembrane component family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF08022 [flax] [poplar] FAD_binding_8 FAD-binding domain CL0091 [flax] [poplar] NAD_Ferredoxin PF08030 [flax] [poplar] NAD_binding_6 Ferric reductase NAD binding domain CL0328 [flax] [poplar] 2heme_cytochrom PF01794 [flax] [poplar] Ferric_reduct Ferric reductase like transmembrane component
Representative CDS sequence Show only first row Show all	>Lus10017850 pacid=23148819 polypeptide=Lus10017850 locus=Lus10017850.g ID=Lus10017850.BGIv1.0 annot-version=v1.0 ATGGCGGCTGGTCATAGTATTAATGCACCAGCTGCAAGGGCTTCTGTTTCAACATCATCTTTATCCTCTTCAAGTTCTTCTTCCTCTTCCTCCTCTAGTT CAATACAGATGCAGCATCAACATTGCAGTTACTTGCTGGATAATGGTCGTTTAGAAGGAGGCCAGCCATCTCCCAATTCAATAAGGTTCATAGACATTGG TTGGGAGGAGGTGGAGAACCGGTTCAACCGGCTGGTTATTGTCAGGGAAGGGTCTCAACCAACGGTCAAAGGGGCTGATTTTGGCTACTGTGTAGGTATA AAGGATGACCCTTTTATGATTGTTGCAGGTTCTGACATGATCAACTGCAGGCTGCAACAGTGTCCTGAGTTTGCAGGTCAGCTTTTGAGGGCATTAAGAG GGAAAAGAAGCAGCAGCAGCAGAAGAAGAATAATAAAAACAGATGAAGAAGATTCCAACTATGGTAGTGGAATCACAATAAGAGAACTTTATAGCCATTG GCATCGGCTGACTTCTTCTAGTTTCAGTTTCCAATCAAGCTCCAACCTTGTATTTGACATATGTGACAGAGATATGGATGGAAAGATTAACCAGGCGGAC ATTAAGCAAGGAATATTGCTAAGTGCTTCAACGAATAGACTGTGTGTAACACATGAGGAAGCACAAGAACATGCTGCTTCAATCATGGAGGTTCTAGATT CAACAAGATGTGGCTACATTGAGCCTAATGAACTAGAAGCACTACTCAGAACAACCTTGCCAGGAAGCAACAACAACAGCAGCAGTGCAAAACTTGTTGT CAATGACAACAACCAAGAAGTGTCGAAAACCAAGGCGGAAATGGTGTTTAGGGCTTATTGGAGGAGATCATGGATATTGTTGCTGTGGTTGATCATCTGC TTCTCACTATTCACATGGAAGTTCATTCAGTACAAGCACAGAATGGCATTTCAGGTAATGGGGTATTGCCTTTCCACTGCCAAAGGTGCAGCTGAGACAC TCAAATTCAACATGGCTTTGATTCTCCTCCCCGTTTGCCGAAACACCATCACTTGGATTAGGAGAAGCACAAGGATCAACTCTGTTGTTCCATTCAATGA CAACATCAACTTCCACAAGATAGTTGGTGGAGGAATAGTGATTGGAGTAATACTACATGGTGGAACACATCTTGCTTGTGACTTCCCAAGAATAAGTGGC TCAGACAAGGCAACTTTCAGGCAAACCATAGCAGCCGATTTTGCTTATCACCAACCTTCATATGTCGAGATATTGGCCACCACAGAGGTTGCAACTGGGA TTGCAATGGTATTACTAATGGCGGTTGCATTCGCTCTGGCGACAAGCTGGCCTCGTCGCCAGTCAGCTTCGCTTCCGAAGTCTGTCAGAAAAATAACTGG TTACAACACATTTTGGTACTCTCACCATTTGCTCATACTTGTCTATGCTCTCCTCATTGTTCACTCCATGTTCCTCTTCCTCACCAACAATCTCTTTGAG AAGACCACATGGATGTACATTGCCTTCCCAGTGATCCTATATGGTGGCGAACGCGTATGGAGAGCCATTAGATCAGATTCTTATAATGTACAAGTTCTGG AAGCAAGCATGTTCCCTGGAAAGGTTTTGCATCTGAAGCTGCAGAAACCTCAAGGTTTCAAGTACAAGAGTGGGATGTACATCTTCATACAGTGCCCTCA GATTTCTAAGCTTCAGTGGCACCCATTTTCATTAACTTCAGGGCCTAAAGATGAGCACTTGAGTGTCCACATGAGAGCTCTTGGTGATTGGAGCTATGAA GTATATGGTCTCTTCCAAGAGGTAATACTATCTGGAAGGAAGGAGTTTCCACAGATATACATAGATGGAGGATATGGAGCTCCATCTCAAGACCATGTTA AGTATGATGTTGTCCTGATGATTGGTCTTGGCATTGGAGCTACACCCTTTATTAGTATCCTCAAAGACATAAGATCTCAGCAGGATGGCAGTGAAGAAAA CAGAAGGGGAAAGGGTCCTTTAAGAGCCTACTTCTACTGGGTGACAAGGGAGCAAAGTTCATTTGATTGGTTCAGAGACAGTCTGAGGGACATAACCACG TCAAATCAAAACATGGTTAGTGTGATTGAGGTGAACAACTTCTTGACAACAGCACATGAAGAAGGAGATGCAAGGTCAGCTCTGATCACTGCAGCACAAG CACTGCATCGTGCCAAGACCGGCCTCGACATGTTGTCCCGGTATCAGGAGGCTAGGACGCATTTTGGTCGACCTAACTGGTTCAGCATCTTCTCAAAGCT TGCTACAAGACACAAACGAGAGAGGATTGGTAAGAACATTAACAGAAAGGAACCGATTAAGTTTCAGTACTGCAGTGCACCGACTGTATGTTTTTCATAT ACAATTGCGATGCTTTGTGTGGGCGCAGGAGTGTTCTACTGTGGACCGTCAGCGCTAGGAAAAGAGTTAGAGGAGCTATGTACTAAATTCTCAACCAAAA CACCCACTCGATTTGTTTTCCACAAGGAACATTACTAG
AA sequence Show only first row Show all	>Lus10017850 pacid=23148819 polypeptide=Lus10017850 locus=Lus10017850.g ID=Lus10017850.BGIv1.0 annot-version=v1.0 MAAGHSINAPAARASVSTSSLSSSSSSSSSSSSSIQMQHQHCSYLLDNGRLEGGQPSPNSIRFIDIGWEEVENRFNRLVIVREGSQPTVKGADFGYCVGI KDDPFMIVAGSDMINCRLQQCPEFAGQLLRALRGKRSSSSRRRIIKTDEEDSNYGSGITIRELYSHWHRLTSSSFSFQSSSNLVFDICDRDMDGKINQAD IKQGILLSASTNRLCVTHEEAQEHAASIMEVLDSTRCGYIEPNELEALLRTTLPGSNNNSSSAKLVVNDNNQEVSKTKAEMVFRAYWRRSWILLLWLIIC FSLFTWKFIQYKHRMAFQVMGYCLSTAKGAAETLKFNMALILLPVCRNTITWIRRSTRINSVVPFNDNINFHKIVGGGIVIGVILHGGTHLACDFPRISG SDKATFRQTIAADFAYHQPSYVEILATTEVATGIAMVLLMAVAFALATSWPRRQSASLPKSVRKITGYNTFWYSHHLLILVYALLIVHSMFLFLTNNLFE KTTWMYIAFPVILYGGERVWRAIRSDSYNVQVLEASMFPGKVLHLKLQKPQGFKYKSGMYIFIQCPQISKLQWHPFSLTSGPKDEHLSVHMRALGDWSYE VYGLFQEVILSGRKEFPQIYIDGGYGAPSQDHVKYDVVLMIGLGIGATPFISILKDIRSQQDGSEENRRGKGPLRAYFYWVTREQSSFDWFRDSLRDITT SNQNMVSVIEVNNFLTTAHEEGDARSALITAAQALHRAKTGLDMLSRYQEARTHFGRPNWFSIFSKLATRHKRERIGKNINRKEPIKFQYCSAPTVCFSY TIAMLCVGAGVFYCGPSALGKELEELCTKFSTKTPTRFVFHKEHY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Lus10017850 [exp]	0	1
AT2G28605			Photosystem II reaction center...		Lus10038658 [exp]	8.7	0.8534
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10007248 [exp]	12.4	0.9036
AT2G25810		TIP4;1	tonoplast intrinsic protein 4;...		Lus10037895 [exp]	14.2	0.8867
AT2G17080			Arabidopsis protein of unknown...		Lus10025121 [exp]	18.0	0.8602
AT3G12540			Protein of unknown function, D...		Lus10040290 [exp]	23.5	0.8165
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Lus10022627 [exp]	24.2	0.8424
AT1G48960			Adenine nucleotide alpha hydro...		Lus10027236 [exp]	24.5	0.8871
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Lus10034123 [exp]	25.3	0.8641
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10004441 [exp]	27.4	0.8694
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10034547 [exp]	30.2	0.8781

Compare expression of checked genes

Lus10017850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.