Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18640 405 / 7e-143 PSP 3-phosphoserine phosphatase (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034686 [exp] 572 / 0 AT1G18640 407 / 2e-143 3-phosphoserine phosphatase (.2) Lus10040521 [exp] 478 / 3e-171 AT1G18640 410 / 3e-145 3-phosphoserine phosphatase (.2) Lus10021156 [exp] 478 / 4e-171 AT1G18640 399 / 7e-141 3-phosphoserine phosphatase (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G066200 [exp] 452 / 3e-161 AT1G18640 417 / 3e-148 3-phosphoserine phosphatase (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10017851 pacid=23148858 polypeptide=Lus10017851 locus=Lus10017851.g ID=Lus10017851.BGIv1.0 annot-version=v1.0 ATGGTTGTCAAATGGATAATTTTGGTTGTTCACATTTTGATTCTCGCGGGTTCTGTTCTTTCACCGTTCTATGTGATATCGATATCTGCTTTTGTTTCTT CGCAGCTGATAGACATGGAACGCTTGGTGCATTCATATACCATCACTCCAATTTATCCTTCTTATAGGCGGCATCCTCGTTCTCCTTTCGTTACTGGATT TTCCTTAGACTTGAGGAAGAAACTAATGCAAAGCTGCGTTGTTACGATGAAACAGCACCCACGATTTGATTTGGTTGCTGCTTCAGCCGAACCACTAAAA TCCTCGTCGTTGAGTGAGTTCGATACCTCACTGCTATCTAAAGAGGTGGTTGACCTTTGGAGAGGTGTTGATGCGGTGTGCTTTGATGTCGATAGCACTG TTTGTCTCGATGAAGGCATCGACGAACTTGCAGACTTCTGTGGAGCTGGGGAGGCTGTTGCAGAATGGACAGCGAGGGCAATGGGTGGTTCTGTTCCTTT CGAGGCGGCCTTGGCTGCTCGATTATCTCTGTTCAAACCCTCCCTATCACAACTCCAAGAATTTTTGGAGAAGAGACCTCCGAAGATCTCTCCTGGGATA GATGAGTTAGTCAAGAAGCTCAAGACCAAGAACATCGATGTTTACTTGATCTCTGGTGGATTTCGGCAGATGATAAATCCTGTTGCTTCAATCCTTGGGA TTCCAGTTGAAAATATATTTGCCAACCAACTTCTATTTGGGAGTTCAGGGGAGTTTGTAGGCTTTGATGCAAATGAGCCTACGTCGAGAAGTGGTGGAAA AGCAACTGCAGTGCAGCAGATAAGAAAGGCTCATGGATATAAAGCTATGGCGATGATTGGGGATGGAGCAACTGATCTTGAGGCTAAAAAACCAGGCGGT GCAGATTTATTCATCTGCTACGGTGGAGTTCAACACCGAGAGGGTGTTGCAGCTAAAGCTGACTGGGTAGTCTTTAATTTTGCAGACTTGATAAACTCTC TAGATTAG
AA sequence Show only first row Show all	>Lus10017851 pacid=23148858 polypeptide=Lus10017851 locus=Lus10017851.g ID=Lus10017851.BGIv1.0 annot-version=v1.0 MVVKWIILVVHILILAGSVLSPFYVISISAFVSSQLIDMERLVHSYTITPIYPSYRRHPRSPFVTGFSLDLRKKLMQSCVVTMKQHPRFDLVAASAEPLK SSSLSEFDTSLLSKEVVDLWRGVDAVCFDVDSTVCLDEGIDELADFCGAGEAVAEWTARAMGGSVPFEAALAARLSLFKPSLSQLQEFLEKRPPKISPGI DELVKKLKTKNIDVYLISGGFRQMINPVASILGIPVENIFANQLLFGSSGEFVGFDANEPTSRSGGKATAVQQIRKAHGYKAMAMIGDGATDLEAKKPGG ADLFICYGGVQHREGVAAKADWVVFNFADLINSLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10017851 [exp]	0	1
AT5G50390		EMB3141	EMBRYO DEFECTIVE 3141, Pentatr...		Lus10013389 [exp]	1.0	0.8917
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10011157 [exp]	3.5	0.8630
AT2G26260		AT3BETAHSD/D2	3beta-hydroxysteroid-dehydroge...		Lus10013413 [exp]	4.5	0.8590
AT3G17430			Nucleotide-sugar transporter f...		Lus10017115 [exp]	5.7	0.8488
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Lus10027775 [exp]	11.7	0.8644
AT5G23550			Got1/Sft2-like vescicle transp...		Lus10029537 [exp]	12.0	0.7964
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10040463 [exp]	14.1	0.7855
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030900 [exp]	16.2	0.8768
AT2G19880			Nucleotide-diphospho-sugar tra...		Lus10034973 [exp]	17.3	0.8127
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10037309 [exp]	18.5	0.8457

Compare expression of checked genes

Lus10017851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.