Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61030 171 / 4e-52 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT1G74230 147 / 6e-43 GR-RBP5 glycine-rich RNA-binding protein 5 (.1) AT3G23830 118 / 1e-33 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT4G13850 115 / 1e-32 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT4G24770 97 / 1e-23 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT2G37220 96 / 2e-23 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G18630 92 / 3e-23 GR-RBP6 glycine-rich RNA-binding protein 6 (.1) AT5G47320 92 / 1e-22 RPS19 ribosomal protein S19 (.1) AT2G21660 91 / 2e-22 CCR2, ATGRP7, GR-RBP7 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) AT3G08000 89 / 3e-22 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034685 [exp] 241 / 7e-80 AT5G61030 177 / 7e-54 glycine-rich RNA-binding protein 3 (.1) Lus10021154 [exp] 215 / 1e-69 AT5G61030 188 / 5e-58 glycine-rich RNA-binding protein 3 (.1) Lus10040519 [exp] 215 / 1e-63 AT5G61030 189 / 2e-53 glycine-rich RNA-binding protein 3 (.1) Lus10032591 [exp] 132 / 8e-39 AT4G13850 157 / 5e-50 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10043158 [exp] 132 / 1e-38 AT4G13850 154 / 1e-48 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10022551 [exp] 130 / 3e-38 AT4G13850 167 / 7e-54 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10016639 [exp] 129 / 7e-38 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10031534 [exp] 94 / 4e-24 AT3G08000 146 / 2e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10015146 [exp] 93 / 7e-24 AT3G08000 145 / 5e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G061600 [exp] 195 / 4e-62 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.015G057400 [exp] 190 / 2e-60 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.017G059000 [exp] 134 / 5e-40 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.001G319900 [exp] 132 / 7e-39 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.001G319800 [exp] 122 / 4e-35 AT4G13850 137 / 2e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.014G157300 [exp] 94 / 4e-24 AT3G08000 129 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G236300 [exp] 91 / 4e-23 AT4G13850 88 / 1e-23 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.006G208500 [exp] 91 / 5e-23 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G086500 [exp] 95 / 6e-23 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.001G340800 [exp] 94 / 7e-23 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10017852 pacid=23148844 polypeptide=Lus10017852 locus=Lus10017852.g ID=Lus10017852.BGIv1.0 annot-version=v1.0 ATGGCCTTCTTTAGCAAAGTTGGAAACGTACTCAAGCGGGCTGCAAGCAAGCAGATAGCTGTGGAATTCTCGGCCTCCAGACCATCCATCCATCAAGCGA TTCGATGCATGTCATCGGCGACATCAAAAGTATTTGTAGGAGGTATTTCTTACAACACAGATGACAATTCTCTGAGAGATGCTTTTGGTAAATATGGAGA AGTCCTTGAAGCTCGAGTCATTGTGGATCGTGAAACTGGAAGATCCAGAGGATTTGGGTTCATTACTTACACCTCCTCTGAGGAGGCATCTAGTGCTATC CAAGCCTTGGACGGGCAGGATCTTCACGGTCGACAGATAAGGGTAAACTATGCAGCTGAAAGGAATCGCAGCTTTGGAGCTGGCGGTGGCTATGGTGGTG GTGGTTATGGAGGTGGTGGTTATGGTGGTGGTGGCTATGGTGGTGGTGCCGGAGGAGGTTATGGTGGTGGTGCCGGGGGAGGTTATGGTGGCAGTGCCGG AGGAGGTTATGGTGGCAGTGCCGGAGGAGGCTATGGTGGCAGTCCTGCTGGAGGGTATGGTGGAGGTAGCCCAGATGGAGGCTTTGGGGGTAACCCTACT GGAGGTAGCAGTGCTGGTTTTGAAGGCGGTGAACAGTTTGGTGCTGCCGGCAATGAGGCTGCTGATACTGGTATTGAATTCGAAGGAAATGGGCTGGATG CCCACGATACTGATGAATTTGCGAAGAGGGCTTGA
AA sequence Show only first row Show all	>Lus10017852 pacid=23148844 polypeptide=Lus10017852 locus=Lus10017852.g ID=Lus10017852.BGIv1.0 annot-version=v1.0 MAFFSKVGNVLKRAASKQIAVEFSASRPSIHQAIRCMSSATSKVFVGGISYNTDDNSLRDAFGKYGEVLEARVIVDRETGRSRGFGFITYTSSEEASSAI QALDGQDLHGRQIRVNYAAERNRSFGAGGGYGGGGYGGGGYGGGGYGGGAGGGYGGGAGGGYGGSAGGGYGGSAGGGYGGSPAGGYGGGSPDGGFGGNPT GGSSAGFEGGEQFGAAGNEAADTGIEFEGNGLDAHDTDEFAKRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10017852 [exp]	0	1
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10018588 [exp]	1.0	0.9424
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10010430 [exp]	1.7	0.9394
AT5G40770		ATPHB3	prohibitin 3 (.1)		Lus10014604 [exp]	2.0	0.9421
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10035418 [exp]	5.3	0.9110
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10014969 [exp]	6.8	0.8801
AT1G20300			Pentatricopeptide repeat (PPR)...		Lus10011459 [exp]	7.3	0.9180
AT5G40770		ATPHB3	prohibitin 3 (.1)		Lus10032072 [exp]	8.9	0.9046
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10034685 [exp]	9.8	0.9350
AT2G47110		UBQ6	ubiquitin 6 (.1.2)		Lus10030894 [exp]	11.0	0.8745
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10007619 [exp]	12.2	0.9232

Compare expression of checked genes

Lus10017852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.