Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26360 1041 / 0 TCP-1/cpn60 chaperonin family protein (.1) AT3G11830 290 / 3e-91 TCP-1/cpn60 chaperonin family protein (.1.2) AT1G24510 287 / 3e-90 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G18190 261 / 3e-80 TCP-1/cpn60 chaperonin family protein (.1) AT3G20050 241 / 1e-72 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT3G03960 222 / 3e-65 TCP-1/cpn60 chaperonin family protein (.1) AT5G20890 216 / 3e-63 TCP-1/cpn60 chaperonin family protein (.1) AT5G16070 201 / 1e-57 TCP-1/cpn60 chaperonin family protein (.1) AT3G02530 201 / 2e-57 TCP-1/cpn60 chaperonin family protein (.1) AT4G33240 97 / 8e-21 FAB1A FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021150 [exp] 1127 / 0 AT5G26360 1046 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10034682 [exp] 1100 / 0 AT5G26360 1016 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10040514 [exp] 1051 / 0 AT5G26360 996 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10008406 [exp] 290 / 7e-91 AT3G11830 1011 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10006457 [exp] 288 / 3e-90 AT1G24510 1009 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10011401 [exp] 287 / 3e-90 AT1G24510 1012 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10036947 [exp] 280 / 2e-87 AT1G24510 1004 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10026773 [exp] 259 / 1e-79 AT3G11830 920 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10037214 [exp] 248 / 6e-75 AT3G20050 999 / 0.0 T-complex protein 1 alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T046300 [exp] 1052 / 0 AT5G26360 1030 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.018G138200 [exp] 1051 / 0 AT5G26360 1029 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G133800 [exp] 1049 / 0 AT5G26360 1028 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G195300 [exp] 304 / 2e-96 AT3G11830 985 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.009G157400 [exp] 288 / 3e-90 AT3G11830 929 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.010G051700 [exp] 285 / 3e-89 AT1G24510 989 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.008G182300 [exp] 276 / 5e-86 AT1G24510 1014 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.012G051300 [exp] 270 / 7e-84 AT3G18190 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.015G042600 [exp] 265 / 8e-82 AT3G18190 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.014G058500 [exp] 248 / 6e-75 AT3G20050 1006 / 0.0 T-complex protein 1 alpha subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10017853 pacid=23148830 polypeptide=Lus10017853 locus=Lus10017853.g ID=Lus10017853.BGIv1.0 annot-version=v1.0 ATGCACGCTCCAGTTCTCGTTCTCAAGGACTCGTTGAAACGCGAGTCTGGACAGAAGGTTCACCATGCTAATATCCAGGCCTCGAAGGCTGTTGCTGACA TTATCCGCACGACCTTGGGTCCTCGATCCATGTTGAAAATGCTTCTTGATGCATCTGGAGGGATTGTTGTTACTAATGATGGAAATGCAATTTTGCGTGA GTTGGATCTTGCTCATCCAGCAGCCAAGTCAATGATTGAGTTAAGCCGTACACAAGATGAAGAAGTTGGGGACGGAACAACGTCTGTTATTGTTCTTGCT GGAGAAATGCTTCATGTTGCGGAAGCCTTCATTGACAAAAATTATCATCCTACAGTCATATGCCGAGCATACAACAAAGCTCTGGAGGATGCTATTGCTG TTCTTGATAAAATTGCTATGACGATAGATGTGAATGACCGTGGAACAATGCTGAGCCTAGTGAAGAGCTGCATTGGCACAAAGTTCACTAGTCAGTTTGG TGACTTGATTGCTGATCTTGCCATTGATGCTACCAAAACTGTCGGTGTCGACCTTGGCCAAGGTTTGCGAGAAGTGGATATCAAGAAATACATTAAGGTT GAAAAGGTTCCTGGAGGACAGTTAGAGGATTCCAAAGTTCTTAAAGGTGTTATGTTTAATAAGGATGTGGTAGCCCCTGGAAAAATGAGGAGAAAGATCG TTAATCCACGTATCATTCTTCTCGACTGCCCACTGGAATACAAGAAAGGAGAGAACCAAACAAATGCCGAGCTGGTCAAAGAAGAAGACTGGGAACTTCT GCTCAAAATGGAAGAGGAGTACATTGAGAATATCTGTGTGCAGATTCTAAAGTTCAAACCGGATTTAGTGATCACCGAGAAGGGTCTGAGTGATTTGGCG TGCCACTATTTTAGCAAAGCTGGTGTGAGTGCAATCAGAAGGCTGAGGAAAACAGACAATAACAGAATTGCTAAGGCATGTGGTGCTGTTATCGTGAACA GACCTGATGAGTTGCAAGAGTCTGATGTTGGTACTGCAGCTGGACTGTTTGAGGTTAAGAAAATTGGAGATGAGTTCTTTTCCTTCATTGTTGACTGCAA AGATCCAAAGGCTTGTACAGTTCTCTTGAGAGGTGCCAGCAAGGATCTTCTGAATGAGGTGGAGAGAAACTTGCAGGATGCCATGGGTGTGGCCAGGAAC ATACTTAAGAACCCAAAACTGGTTCCCGGAGGTGGCGCCACTGAGTTGACTGTATCTGCTACACTAAAGCAGAAGAGTTCATCTGTTGAAGGCATTGAAA AGTGGCCTTATGAAGCAGCTGCTATAGCTTTTGAAGCAATTCCACGAACTTTGGCCCAGAATTGTGGTGTTAACGTGATCCGAACAATGACTGCCTTGCA AGGAAAACATGCAAACGGTGAAAATGCATGGACCGGCATTGACGGGAACACTGGTGAAATCACTGACATGAAAGATAGAAAGATCTGGGATGCTTACAAC GTGAAGGCACAGACCTTCAAAACAGCAATAGAAGCAGCTTGCATGCTGTTGAGGATTGACGACATTGTTAGTGGAATCAAGAAGAAGCAGGCCCCTGGAG CCGGGCCGTCAAAGCCACAAATCGAGACTGAAAACGATGCTGATGGCGAGCAAATTCTTCCAGACTAA
AA sequence Show only first row Show all	>Lus10017853 pacid=23148830 polypeptide=Lus10017853 locus=Lus10017853.g ID=Lus10017853.BGIv1.0 annot-version=v1.0 MHAPVLVLKDSLKRESGQKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDLAHPAAKSMIELSRTQDEEVGDGTTSVIVLA GEMLHVAEAFIDKNYHPTVICRAYNKALEDAIAVLDKIAMTIDVNDRGTMLSLVKSCIGTKFTSQFGDLIADLAIDATKTVGVDLGQGLREVDIKKYIKV EKVPGGQLEDSKVLKGVMFNKDVVAPGKMRRKIVNPRIILLDCPLEYKKGENQTNAELVKEEDWELLLKMEEEYIENICVQILKFKPDLVITEKGLSDLA CHYFSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTAAGLFEVKKIGDEFFSFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMGVARN ILKNPKLVPGGGATELTVSATLKQKSSSVEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWTGIDGNTGEITDMKDRKIWDAYN VKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGAGPSKPQIETENDADGEQILPD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10017853 [exp]	0	1
AT3G02530			TCP-1/cpn60 chaperonin family ...		Lus10017585 [exp]	1.4	0.9542
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10004649 [exp]	3.2	0.9409
AT5G40200		DEGP9	DegP protease 9 (.1)		Lus10032163 [exp]	3.5	0.9371
AT4G30840			Transducin/WD40 repeat-like su...		Lus10007707 [exp]	3.6	0.9164
AT2G07560		AHA6	H\(+\)-ATPase 6, H\(+\)-ATPase...		Lus10020149 [exp]	4.0	0.9244
AT5G64950			Mitochondrial transcription te...		Lus10029199 [exp]	4.9	0.9186
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Lus10024024 [exp]	4.9	0.9301
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Lus10009545 [exp]	6.7	0.9325
AT1G54610			Protein kinase superfamily pro...		Lus10033975 [exp]	6.7	0.9233
AT2G38550			Transmembrane proteins 14C (.1...		Lus10025221 [exp]	7.2	0.8995

Compare expression of checked genes

Lus10017853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.