Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08060 186 / 4e-62 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034681 [exp] 267 / 5e-94 AT5G08060 186 / 6e-62 unknown protein Lus10017855 [exp] 247 / 5e-86 ND 170 / 2e-55 Lus10040513 [exp] 214 / 2e-73 AT5G08060 179 / 1e-59 unknown protein Lus10021149 [exp] 188 / 5e-63 AT5G08060 156 / 2e-50 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G123700 [exp] 179 / 4e-59 AT5G08060 146 / 3e-46 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017854 pacid=23148796 polypeptide=Lus10017854 locus=Lus10017854.g ID=Lus10017854.BGIv1.0 annot-version=v1.0 ATGGCGAAACCCTCCACCGCGGCGGCGAGCTCATTCCTTCAAACGCTGAGGCGCTACATCAAGAAACCGTGGGAGATAACCGGGCCCTGCGCCGATCCGG AATACCGAACTGCCATCCCCAAAGCTGTGGAGTACCGACTTCAATGCCCCGCCACCACAACGCTGCAGCCCATCGTCCCCAACTCCGACCCTGAGACAGT GTTCGACATCAAGTATCACACCCGGGATCAGCGCCGCAACAGGCCGCCGATCAACCGCACCCTTCTGAAAAAGGCCGATGTGGTCAAGATGATGAATGAG AAGACCTTTGAGCCCACCGATTTCCCTCCCGTTTATTTGGTCGGAGCGATGGAGGAGGATATCAATACCCGAGGCGGTGGCTACCAGAAATGA
AA sequence Show only first row Show all	>Lus10017854 pacid=23148796 polypeptide=Lus10017854 locus=Lus10017854.g ID=Lus10017854.BGIv1.0 annot-version=v1.0 MAKPSTAAASSFLQTLRRYIKKPWEITGPCADPEYRTAIPKAVEYRLQCPATTTLQPIVPNSDPETVFDIKYHTRDQRRNRPPINRTLLKKADVVKMMNE KTFEPTDFPPVYLVGAMEEDINTRGGGYQK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08060			unknown protein		Lus10017854 [exp]	0	1
AT5G47030			ATPase, F1 complex, delta/epsi...		Lus10040130 [exp]	3.7	0.9131
					Lus10037253 [exp]	6.7	0.8803
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10028977 [exp]	8.2	0.8814
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10019137 [exp]	11.5	0.8948
AT3G10920		MSD1, MEE33, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10034222 [exp]	15.2	0.8648
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10041105 [exp]	16.5	0.8697
AT2G20820			unknown protein		Lus10031625 [exp]	16.8	0.8923
AT1G24265			Protein of unknown function (D...		Lus10011347 [exp]	19.1	0.8636
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10014747 [exp]	21.4	0.8433
AT1G54140		TAF9, TAFII21	TBP-ASSOCIATED FACTOR 9, TATA ...		Lus10012411 [exp]	22.6	0.8724

Compare expression of checked genes

Lus10017854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.