Plant FIBer expression Database

Lus10017855 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017854
[exp]
191 / 5e-64 AT5G08060 186 / 5e-62 unknown protein
Lus10034681
[exp]
175 / 2e-57 AT5G08060 186 / 6e-62 unknown protein
Lus10021149
[exp]
84 / 2e-21 AT5G08060 156 / 2e-50 unknown protein
Lus10040513
[exp]
84 / 2e-21 AT5G08060 179 / 1e-59 unknown protein
Lus10034680
[exp]
49 / 8e-08 AT3G27210 42 / 1e-04 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G123700
[exp]
57 / 3e-11 AT5G08060 146 / 3e-46 unknown protein
PFAM info
Representative CDS sequence
>Lus10017855 pacid=23148843 polypeptide=Lus10017855 locus=Lus10017855.g ID=Lus10017855.BGIv1.0 annot-version=v1.0
ATGATGGGGGTCATCAAACTGCAGGAAAGAAGAGTAAGTCCTGAGATCATGGTGGAGGCAGCTGAAATGGCCACCGCCTCGGGTATTGATATCCTCCTCC
ATCGCTCCGACCAAATAAACGGGAGGGAAATCGGTGGGCTCAAAGGTCTTCTCATTCATCATCTTGACCACATCGGCCTTTTTCAGAAGGGTGCGGTTGA
TCGGCGGCCTGTTGCGGCGCTGATCCCGGGTGTGATACTTGATGTCGAACACTGTCTCAGGGTCGGAGTTGGGGACGATGGGCTGCAGCGTTGTGGTGGC
GGGGCATTGAAGTCGGTACTCCACAGCTTTGGGGATGGCAGTTCGGTATTCCGGATCGGCGCAGGGCCCGGTTATCTCCCACGGTTTCTTGATGTAGCGC
CTCAGCGTTTGAAGGAATGA
AA sequence
>Lus10017855 pacid=23148843 polypeptide=Lus10017855 locus=Lus10017855.g ID=Lus10017855.BGIv1.0 annot-version=v1.0
MMGVIKLQERRVSPEIMVEAAEMATASGIDILLHRSDQINGREIGGLKGLLIHHLDHIGLFQKGAVDRRPVAALIPGVILDVEHCLRVGVGDDGLQRCGG
GALKSVLHSFGDGSSVFRIGAGPGYLPRFLDVAPQRLKE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10017855
[exp]
0 1
AT1G52820 2-oxoglutarate (2OG) and Fe(II... Lus10025760
[exp]
6.5 0.5659
AT3G47110 Leucine-rich repeat protein ki... Lus10038688
[exp]
10.5 0.5549
AT2G38500 2-oxoglutarate (2OG) and Fe(II... Lus10025240
[exp]
22.9 0.4931
AT5G45550 MOB1-like MOB1-like, Mob1/phocein family... Lus10007595
[exp]
39.7 0.4626
AT4G26590 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPT... Lus10031978
[exp]
40.9 0.4867
AT2G14610 PR-1, PR1, ATPR... pathogenesis-related gene 1 (.... Lus10007110
[exp]
42.0 0.4470
AT2G30710 Ypt/Rab-GAP domain of gyp1p su... Lus10025585
[exp]
43.6 0.4543
AT4G12910 SCPL20 serine carboxypeptidase-like 2... Lus10020207
[exp]
52.5 0.4708
AT5G33340 CDR1 CONSTITUTIVE DISEASE RESISTANC... Lus10024903
[exp]
59.3 0.4255
AT2G44810 DAD1 DEFECTIVE ANTHER DEHISCENCE 1,... Lus10028210
[exp]
62.4 0.4558

Lus10017855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.