Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60970 171 / 4e-50 TCP TCP5 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1) AT5G08070 139 / 2e-39 TCP TCP17 TCP domain protein 17 (.1) AT3G02150 136 / 6e-38 TCP TFPD, PTF1, TCP13 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2) AT1G30210 109 / 3e-27 TCP ATTCP24, TCP24 TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 (.1.2) AT4G18390 107 / 2e-26 TCP TCP2 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) AT1G53230 96 / 4e-22 TCP TCP3 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 (.1) AT3G15030 92 / 1e-20 TCP TCP4, MEE35 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) AT2G31070 86 / 2e-18 TCP TCP10 TCP domain protein 10 (.1) AT1G68800 76 / 4e-15 TCP TCP12, BRC2, TCP18 BRANCHED 2, TCP domain protein 12 (.1) AT1G67260 73 / 3e-14 TCP TCP1 TCP family transcription factor (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034679 [exp] 337 / 8e-115 AT5G60970 169 / 2e-49 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1) Lus10032984 [exp] 115 / 2e-29 AT3G02150 142 / 3e-40 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2) Lus10038512 [exp] 112 / 2e-27 AT4G18390 204 / 1e-60 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Lus10023297 [exp] 110 / 5e-27 AT4G18390 207 / 8e-63 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Lus10000463 [exp] 90 / 7e-20 AT3G15030 224 / 1e-69 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Lus10034072 [exp] 73 / 6e-14 AT1G67260 100 / 4e-23 TCP family transcription factor (.1.2) Lus10003078 [exp] 72 / 7e-14 AT1G67260 105 / 2e-25 TCP family transcription factor (.1.2) Lus10035055 [exp] 68 / 9e-13 AT1G68800 102 / 7e-25 BRANCHED 2, TCP domain protein 12 (.1) Lus10021713 [exp] 68 / 1e-12 AT3G18550 107 / 2e-26 BRANCHED 1, TCP family transcription factor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G058800 [exp] 172 / 1e-50 AT5G60970 177 / 6e-52 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1) Potri.004G116100 [exp] 140 / 1e-38 AT3G02150 173 / 1e-50 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2) Potri.017G094800 [exp] 137 / 3e-37 AT3G02150 161 / 4e-47 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2) Potri.004G065800 [exp] 112 / 2e-27 AT4G18390 151 / 2e-41 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Potri.011G083100 [exp] 110 / 9e-27 AT4G18390 150 / 5e-41 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Potri.001G375800 [exp] 92 / 9e-21 AT1G53230 279 / 1e-90 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 (.1) Potri.013G119400 [exp] 91 / 1e-20 AT3G15030 243 / 4e-77 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.019G091300 [exp] 90 / 3e-20 AT3G15030 227 / 5e-71 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.011G096600 [exp] 91 / 4e-20 AT3G15030 262 / 7e-84 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.017G112000 [exp] 68 / 1e-12 AT1G67260 111 / 1e-27 TCP family transcription factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03634 [flax] [poplar] TCP TCP family transcription factor
Representative CDS sequence Show only first row Show all	>Lus10017856 pacid=23148842 polypeptide=Lus10017856 locus=Lus10017856.g ID=Lus10017856.BGIv1.0 annot-version=v1.0 ATGGAAGAAGAAGGAGCAGCAAAGCAAGAAGACCAAACCAGTTTGAACCACCCAAGAACAGCAACAGCAGCAGCACCACCAGGAGGAAGCAATAGGTCAA CAACATCATCACAATGGTCAGCGTTTCGAAACCCGAGGATCGTGCGAGTCTCCCGAACCTTCGGAGGGAAAGATAGGCACAGTAAAGTGTGCACCGTCAG AGGGTTGAGAGACAGGAGGATCCGTCTCTCGGTCCCTACGGCCATCCAGCTGTACGACCTCCAAGACCGGCTCGGGCTAGGCCAGCCGAGCAAGGTTATC GACTGGCTCATCGAGAACACATCCGACGACATAGACAAGCTCCCCCCTCTCCAGCTCCCTCATTCATTCGGTATCGAAGCTGCATCCGGTGGTGGTGGAC ACCTTCATCAGTATTATAACTCGTCGCTGGCACATATGGCGCCCTTCTTCGATTTCGGGAGGCCAGGTACTAGTACTACAAATAATACTAGTGCTAGTAG TAGTAGTGGTACTTGTGGGTTGTTTGATCAGCAGCAACATTTGAACTCTTTGTACCAATGGGGGGATCATCATCATAATCAGAATCACTATCAAAATCAG CTACCAATACTAGGATTGGGGAATAACTATGGACATGATCATCATCATGTCTCTAGTGGTGGTGGTGGTGGTGGTGGTGCGAATTTCTTTCTGCCTTCGT CGTATTTGGCACTGTCGAACAATACTACTTCGGCCAGTACTAGTACCACTAGTAGCACTTCTCCACATGATCAGCCGACGACAATGTTGATGCCACCACC ACCGCAGCAGTATTCAGCTTATAATAATCAGCTGGAGATGATGAGTAGTGATAATCATCATCATCAGAATTATCAACGACAACAGCAGCAGTTACTCTTT CAGAGCGCAACAACGACAAGACCGACACCTCATTTCCCGTTCAACATATTCAATGCAGACAATGGTCACGACGACAATGGCGGAGGCAGCAGTGGTTCTT GA
AA sequence Show only first row Show all	>Lus10017856 pacid=23148842 polypeptide=Lus10017856 locus=Lus10017856.g ID=Lus10017856.BGIv1.0 annot-version=v1.0 MEEEGAAKQEDQTSLNHPRTATAAAPPGGSNRSTTSSQWSAFRNPRIVRVSRTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLGQPSKVI DWLIENTSDDIDKLPPLQLPHSFGIEAASGGGGHLHQYYNSSLAHMAPFFDFGRPGTSTTNNTSASSSSGTCGLFDQQQHLNSLYQWGDHHHNQNHYQNQ LPILGLGNNYGHDHHHVSSGGGGGGGANFFLPSSYLALSNNTTSASTSTTSSTSPHDQPTTMLMPPPPQQYSAYNNQLEMMSSDNHHHQNYQRQQQQLLF QSATTTRPTPHFPFNIFNADNGHDDNGGGSSGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60970	TCP	TCP5	TEOSINTE BRANCHED 1, cycloidea...		Lus10017856 [exp]	0	1
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10021809 [exp]	1.7	0.9497
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Lus10019407 [exp]	2.0	0.9615
AT1G13290	C2H2ZnF	WIP6, DOT5	WIP domain protein 6, DEFECTIV...		Lus10021700 [exp]	2.0	0.9586
AT2G31580			tRNAHis guanylyltransferase (....		Lus10006155 [exp]	2.8	0.9491
AT5G08250			Cytochrome P450 superfamily pr...		Lus10013438 [exp]	4.0	0.9347
AT5G18880			RNA-directed DNA polymerase (r...		Lus10023044 [exp]	4.6	0.9357
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10017600 [exp]	6.0	0.9359
AT1G15260			unknown protein		Lus10011448 [exp]	7.1	0.9489
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10033561 [exp]	9.2	0.9222
AT4G37810			unknown protein		Lus10007240 [exp]	10.2	0.9228

Compare expression of checked genes

Lus10017856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.