Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74160 670 / 0 unknown protein AT1G18620 567 / 0 unknown protein AT5G15580 232 / 5e-63 LNG1 longifolia1 (.1) AT3G02170 203 / 9e-54 LNG2 longifolia2 (.1) AT5G15581 58 / 6e-10 unknown protein AT3G63430 56 / 9e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034678 [exp] 1407 / 0 AT1G74160 594 / 0.0 unknown protein Lus10034677 [exp] 557 / 0 AT1G74160 182 / 1e-51 unknown protein Lus10021148 [exp] 268 / 2e-79 AT1G74160 236 / 9e-69 unknown protein Lus10003090 [exp] 68 / 4e-11 AT3G63430 236 / 1e-68 unknown protein Lus10018750 [exp] 64 / 7e-10 AT3G63430 248 / 6e-73 unknown protein Lus10014716 [exp] 63 / 1e-09 AT3G63430 227 / 2e-65 unknown protein Lus10024836 [exp] 59 / 2e-08 AT3G63430 246 / 3e-72 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G058900 [exp] 1157 / 0 AT1G74160 795 / 0.0 unknown protein Potri.012G061900 [exp] 1078 / 0 AT1G74160 730 / 0.0 unknown protein Potri.017G095000 [exp] 501 / 1e-159 AT1G74160 399 / 3e-122 unknown protein Potri.005G216300 [exp] 64 / 6e-10 AT3G63430 245 / 3e-72 unknown protein Potri.002G046700 [exp] 50 / 9e-06 AT3G63430 327 / 8e-103 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017857 pacid=23148853 polypeptide=Lus10017857 locus=Lus10017857.g ID=Lus10017857.BGIv1.0 annot-version=v1.0 ATGGCAGCCAAACTCTTGCATTCTTTGGCTGATGATAATCCAGATTTGCAGAAGCAAATTGGATGTATGACTGGTATATTTCAAATCTTTGATCGCCAAC AAATGGTCACCGGTAGGCGCCTCAACCCGAAGAAGCTACTGCCTCCAGGTGAATCACACTTTGTTCGTGGCAGCTCAGACAGGGAATCTTTCAATGTATA CCATCGGCAACTACCCCTTGATATGAGCACAAACAAGAGTTCGAATGAAAAGCAACGGATCTCTACTGAATCATCAAGAGCTTCTTTTTCTTCCTCTTGT TCCTCTTTCTCCTCTCTTGACAACAGAACAACTCAACCAGAAACCTCCTCTACTGATAGAATAATATTTCCTGTAACTCCTTCAAGGGATCCAGTTTTAG CTCAGCCGAGTACCTGTTCGTATTCAGAAAGGCACTCTGTTGATTTACGGGATGTTGTTAAGGACTCTATGTATAGGGATGCAAGAGGACTATCAGTTAA AACTATGAAGAATGAGGGAGCGAAGGGAAATGCCTTGAAGCATAAAGATTCTCCAAGGCCATTGCAGCTCTCTAAGTCAGCAGATGGATCTTATGGTGTT GCAAACAGTAAGGCTAATCAAAATATTCCAGCTGATGTTCACGAGTCTTTACGAGTTCTAGCCAAGCTTCGAGAGGCACCTTGGTATCACAACGAAACTA GAGAGCACGCAAGGCCGTCATATGAATCAAAGGATATTTGGAGTACAGTCACAAAAGATGCTCCTCGGTTTTCTTATGATGGTAGAGATGCAAACCGTTC ATCTTTTGAATCACGAGATACCATCAAGTCTTCCCCAAAGCTAAAAGAGCTTCCCAGACTTTCTTTGGACAGTAGAGAAAGGTCAATGAAGGCTTCCATC TCCGATTCAAAAGGAAATAGCAATTACCTTGGAAGAGACTCGCGAAATATGACAAACTCATCAGGAAATCAGAACAGGCCAGCAAGTCTGGTTGCCAAGT TGATGGGATTGGAGACGTTACCCGATTCTGAACTGGCTAGTCAGTCCGGTTCACTCAAGACATCACTGGATGAGCGTACCGATTCCTTCTCAAGATCGTT CAAGAAAAACGATCTAAATGCAGGGATCAGGATTCCCAAGTCTCCAAGAAGCTTGATGAAAGAGCCGGTATCACCACGTCGGAAGACACCTGATTTGCAA ATGAAACCCATTTCAAAGTTGCCAATTGAACCAGCTCCGTGGAAGCAGTCAGATGGAACTCGAGGTGCTCATAAATCACCTTTCAAGGTCGCAAAAGCTC CAGCTAAAACACAGAGCTCCTTTCCTTCAGTATACAGTGAGATTGAGAAGAGATTGAAGGATCTTGAGTTCAAACAATCTGGCAAAGATCTGAGAGCTCT TAAACAGATTCTAGAAGCAATGCAGGCAAAGGGACTTCTCGAGACCGGGAAAGAGGAGCAAGATCCAAAATTTGTTACTCAACCTGATTTTGATCTCAAG AGTGCTGCTCCGAGTCAAAGGCCTGGATTTAGGCAACAAAACGTGCAGGAAAATTTGGCTAGTGCTTCTAGAACTAGAGCTTCGCGAACTTATGACTCCC CCATAGTGATCATGAAACCAGCCAAACTGGCTGAGAAATCTGGAATTTCTCCTTCCTCAATGATCCCGATCGATGGCCTTCCAATGCTTCGAAGAATTCA GAATGGTGGGTATGCTAGCAGTAGACAGGGAACATCAGCTAGTAGCCGGGCTGTTAAAGACCAGTCACCGAGAAACATTCACAGGGAACCGATTTCAGTC CCCGGTGACAAGGAAACAAGTGTTAATAGGGGCATAAGATCAAATCAGACTTCTTCAAAGCCTCAACTTTCAACAAGAGAAAGCTCAAGCAGCTCTATAA AGAGCACAGGATCAGTGAGTCCAAGACTACAGCAGAGGAAAGTTGAGCTGGAGAGGAGATCTCGCCCGCCAACTCCCCCGAGTGATACGAACAAACCAAG AAGACAGTCTGGAAGACAGCCAACAGAATCCGGTTCCCCCGGTGGAAAATACCGGATGCGGGCTCCTAAACAATCACAGAATGATGACCAACTGAGCCAG ATAAGTAATGAGTCAAGAACTTCTAGTTATCAAGGTGATGACGTGTCAATGCATTCGGACAGCAGCACTGTTGTGTTTGACATGAAGACGGATGTGGAGG TCACAAGTCCTGACCTATCTACTGCTGAAAAAGCTACTAACTTTTTGGTTTCTGTTTCAATGCACAATAAAGAAACTTCAAAGTTTGAGGAGGAGGTATC CGTGGTGGAACTAGTCGCTACTCCGGAGCAACCTAGTCCTATTTCAGTCCTTGATTCTTCTGCGTATAAAGATGATGTCATCTCCCCTATCAAACAGACA CCTAATACGCCTGAAGGTGATGGTACTCAGAGTTCCATAGATTGTCAAAATGATGACCAGTGGCTCTCATCAGAATCCCTCTCCAACTGCACAGGTTCCA CTCTCACCTCAGATATGAGCCGCAAGAAGTTGAAGAACATTGATAACTTGGTACGAAAGCTTACACGGCTAAACTCCACGCACGATGAAGCTAGCACGGA CTATATAGCATCACTCTGCGAGAAGAATACCAATCCAGACCATCGATACATTTCGGAGATCCTGTTAGCTTCAGGCCTTCTACTTAGAGACCTTGGAAGC TCAGGCCTAGCAACATTTCAGTTGCACCCGTCGGGCCATCCCATCAACCCGGAGCTGTTTTTTGTCCTTGAGCAGACCAAGGCCAGCAATCTGCAAACAA AGGAAGAGAACATTCCTCTAGAACCTTGCCATGCAAGGCGAACTGCTGAGAAGTTCCACCGCAAACTCATATTCGACGCTGTGAATGAGATCCTCGTAAC GAAGTTAGACTTGCCAGGTGCGTCGCCTGTACCACCACGGATGAGGTCTAGTAATAAGCTGGCCAAGAAGACCATCACAGCGCAAAAGCTTCTGAAGGAG CTGTGTTCGGAGATTGAACAGCTTCAAGTTGCCAAGAAACCGGAAGAGGAGGAGGAAGAGGATGGTTTGAAAGCTGTTTTATGCGAAGATGTGGAACGAA GATCGGAGAGTTGGACAGTCTTTGATAATGAGGTATCTGGGTTAGTTCTGGATGTTGAGAGGCTGATATTTAAAGATTTAGTTGGTGAGATTGTGATGGG AGAGACGGCCGGTTCGGTGAGCAAAATAGGTAGGAGGCAGCTGTTTGCTAATTAG
AA sequence Show only first row Show all	>Lus10017857 pacid=23148853 polypeptide=Lus10017857 locus=Lus10017857.g ID=Lus10017857.BGIv1.0 annot-version=v1.0 MAAKLLHSLADDNPDLQKQIGCMTGIFQIFDRQQMVTGRRLNPKKLLPPGESHFVRGSSDRESFNVYHRQLPLDMSTNKSSNEKQRISTESSRASFSSSC SSFSSLDNRTTQPETSSTDRIIFPVTPSRDPVLAQPSTCSYSERHSVDLRDVVKDSMYRDARGLSVKTMKNEGAKGNALKHKDSPRPLQLSKSADGSYGV ANSKANQNIPADVHESLRVLAKLREAPWYHNETREHARPSYESKDIWSTVTKDAPRFSYDGRDANRSSFESRDTIKSSPKLKELPRLSLDSRERSMKASI SDSKGNSNYLGRDSRNMTNSSGNQNRPASLVAKLMGLETLPDSELASQSGSLKTSLDERTDSFSRSFKKNDLNAGIRIPKSPRSLMKEPVSPRRKTPDLQ MKPISKLPIEPAPWKQSDGTRGAHKSPFKVAKAPAKTQSSFPSVYSEIEKRLKDLEFKQSGKDLRALKQILEAMQAKGLLETGKEEQDPKFVTQPDFDLK SAAPSQRPGFRQQNVQENLASASRTRASRTYDSPIVIMKPAKLAEKSGISPSSMIPIDGLPMLRRIQNGGYASSRQGTSASSRAVKDQSPRNIHREPISV PGDKETSVNRGIRSNQTSSKPQLSTRESSSSSIKSTGSVSPRLQQRKVELERRSRPPTPPSDTNKPRRQSGRQPTESGSPGGKYRMRAPKQSQNDDQLSQ ISNESRTSSYQGDDVSMHSDSSTVVFDMKTDVEVTSPDLSTAEKATNFLVSVSMHNKETSKFEEEVSVVELVATPEQPSPISVLDSSAYKDDVISPIKQT PNTPEGDGTQSSIDCQNDDQWLSSESLSNCTGSTLTSDMSRKKLKNIDNLVRKLTRLNSTHDEASTDYIASLCEKNTNPDHRYISEILLASGLLLRDLGS SGLATFQLHPSGHPINPELFFVLEQTKASNLQTKEENIPLEPCHARRTAEKFHRKLIFDAVNEILVTKLDLPGASPVPPRMRSSNKLAKKTITAQKLLKE LCSEIEQLQVAKKPEEEEEEDGLKAVLCEDVERRSESWTVFDNEVSGLVLDVERLIFKDLVGEIVMGETAGSVSKIGRRQLFAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74160			unknown protein		Lus10017857 [exp]	0	1
AT1G74160			unknown protein		Lus10034677 [exp]	1.0	0.9108
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10022534 [exp]	2.6	0.8561
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10003190 [exp]	3.5	0.8762
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10020804 [exp]	3.7	0.8996
AT5G23280	TCP	TCP7	TCP family transcription facto...		Lus10010177 [exp]	3.9	0.8616
AT1G63300			Myosin heavy chain-related pro...		Lus10014980 [exp]	4.2	0.8573
AT5G62350			Plant invertase/pectin methyle...		Lus10038914 [exp]	5.3	0.8430
AT3G02645			Plant protein of unknown funct...		Lus10026964 [exp]	6.7	0.8524
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10007386 [exp]	6.9	0.8869
AT4G34760			SAUR-like auxin-responsive pro...		Lus10012189 [exp]	6.9	0.8529

Compare expression of checked genes

Lus10017857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.