Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26190 215 / 1e-58 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G36540 148 / 3e-40 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G29760 131 / 2e-32 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G36550 114 / 1e-29 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034676 [exp] 997 / 0 AT4G26190 225 / 3e-62 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10021147 [exp] 325 / 1e-97 AT4G26190 241 / 2e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10007989 [exp] 319 / 2e-94 AT4G26190 247 / 3e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10032890 [exp] 207 / 1e-60 AT4G26190 214 / 7e-63 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10019759 [exp] 168 / 6e-47 AT2G36540 174 / 1e-53 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10027135 [exp] 120 / 3e-30 AT3G29760 134 / 5e-36 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10016365 [exp] 89 / 1e-19 AT2G36540 87 / 1e-20 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10019760 [exp] 76 / 3e-15 AT2G36540 93 / 7e-23 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G059000 [exp] 303 / 2e-95 AT4G26190 253 / 9e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.004G116400 [exp] 237 / 1e-67 AT4G26190 235 / 4e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G244200 [exp] 215 / 2e-64 AT2G36540 190 / 4e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G244400 [exp] 177 / 2e-50 AT2G36540 169 / 1e-51 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Lus10017858 pacid=23148867 polypeptide=Lus10017858 locus=Lus10017858.g ID=Lus10017858.BGIv1.0 annot-version=v1.0 ATGTCTGTTGAAAAGGACGCATGCATGGCAGATACTCTATCCGGCGTCGAGGCGGAATTCTCACAGTTAATGAAAAAGAGGAAAAAGAAACGGCTTAAGA GTACACAGTGCTCAACTGGTGATTCTCTGGTTGATGGTGAAAACAATGATGTCGATAAGGCTGGACTTGATGCTAGTTCTTTGAAAGATTCCGATAGGGC ACATAAGAAAGAATCAGTTAGCTTAATGGAGGAAACAAAAAAGAAGAAGAAGAAGCGGAATAAAGGTTTGGACAGTCTCCAACCCACAAAAATGCTTCCA TCACAAGAACATATTGAAAATATGCAGAACTTAAGTTGTGATTCTCTAGCTGGCATTTCAGGGAACACTTTTGGTGAATCAGTTAAGTATGTCAGTAAGG TTGATGTTGATGATAAATTAAAGATAGATTCAAATACTGCAACAGAAATGATTACTGCACATGAAGAAGGAAAGAAATGGAAAAAGCGGAAGAAAGATAG GAGCAGTACCCAGCAGGCAGAATTGCTTGCATCACAAGATGAAGAACAGTTAGAGAAGATAGAGAGCATTAGTTGTGATTCACAGGCTTACAATTCTAAT ATGAAGGGTGCAGTTTGTCATACAGCCAGTCATGTGAAGGAGAATGAAGTTGATGTTGAATCAAAGGAAGATTTGAAGACTACCCAGGCTATAGAGTCCA ATCCCTTCCAGGAACGGCGAATGGAAAAGAGAAGGCGGAAGAAAGATATGATAATAGATGAGAATTCTTCCCTGGCTACAGAGTCAGCTACATTACAGAA AGGGGAAAAGAAAAAGAAGAAGCAGAGAAAAGATGTGAATAGTTCCGATACAAGTGATTTGGTTGCAAGCCAGGAAGAACGGAAGGAAAAGAAAAGGGAG AAAAAAGATTTGAATAGTTCCAATGCAAGTGATGTGGTTGCATCACAAGAGGAGAAAAAGCAAAAGAAGAAGCAGAAAAAAGATTTGAATGGCTGCCAAA CCATTCAATTGCTTGCATCAGAGGAGGAGGAGAAGAAAAGCAAGAAGCGGAAGAAAAGTGCAAAAAGTTCTTGTCTTGATGAGGCAGACGTTGATAATAA AAATAAGAAGATGGATGCAAATAGTTGTCAGGCTACAGAACCAAATGAAGTACAGGAGGAAGGAAAGAAAAGGAAGAGGAAGAAGAAAGGCTTGAAGTGT TTGGAGCCTTCTCAATCTCTGACTTCACCCCTGGAAGATAAAAAAGACAAGAAGCAGAAGAAATCTTTGGATGATGCGCTGCCTGTGGATTTATTTCCAT TACAAGAGGCAGGTCGTAAAACGACCCTAGAGGAGAACACCAATTCTGGCTGTTCTGTCAGCAACAAGACAACAGGAATATTGAATTGCATCAATGTGGC CGTGCCTATTGAAAAGGACATGATACCGCATGCTTGTAAGAAGCTTCTCATCCTTGATGTAAATGGGCTTTTAGCTGATTTTGTTCTACACACAGAGCGC CTAGCAACACGGAAGCCTGACCTTTACCTCCGGGGAAAATCAGTTTACAGAAGGCCCTATTGTGAAGATTTTATTCGCTTCTGCTTGGAGAATTTTAATG TTGGTGTTTGGTCGTCAAGGGTCAAGAACAACTTGACCCAAGTTGTCAGGTTTCTCTTCAAACGTACAGAACACAAATTGCTATTCTGTTGGGACCGATC ACACTGCACAAATACAGGCTTAAACACTGTTGAAGACAAGAACAAACCGCTGGTTTTAAAAGAATTGGAAAAAGTATGGAGGAAGATTCCTGCAGGACAT GGTAAGGCCTTTGATGCATCAAACACACTACTGCTGGACGATTCACCTTATAAGGCTTTATGCAATCCTGTACATACGGCTGTATTTCCCCATTCGTACA AGTGCACTGATGCTGAAGATTCTTCATTAGGACCAGAAGGGGATCTTCGCAAGTATCTGGAACGGTTAGCCAAAGCTCCGAACGTTCAAGAGTTTGTGTC CCAAAATCCGTTTGGTCAAAGACCTATTACAGCATCAGACCCAGATTGGCCCTTTTATCGCCAGATCATAGCCAAGTCAAATAGTAAGCAAACAAGGTGT ATCCAGATATCGAAAACAAAATCGATCGATGCCAACCATCACTCACAGCAGCATATCAGATTTGAATGA
AA sequence Show only first row Show all	>Lus10017858 pacid=23148867 polypeptide=Lus10017858 locus=Lus10017858.g ID=Lus10017858.BGIv1.0 annot-version=v1.0 MSVEKDACMADTLSGVEAEFSQLMKKRKKKRLKSTQCSTGDSLVDGENNDVDKAGLDASSLKDSDRAHKKESVSLMEETKKKKKKRNKGLDSLQPTKMLP SQEHIENMQNLSCDSLAGISGNTFGESVKYVSKVDVDDKLKIDSNTATEMITAHEEGKKWKKRKKDRSSTQQAELLASQDEEQLEKIESISCDSQAYNSN MKGAVCHTASHVKENEVDVESKEDLKTTQAIESNPFQERRMEKRRRKKDMIIDENSSLATESATLQKGEKKKKKQRKDVNSSDTSDLVASQEERKEKKRE KKDLNSSNASDVVASQEEKKQKKKQKKDLNGCQTIQLLASEEEEKKSKKRKKSAKSSCLDEADVDNKNKKMDANSCQATEPNEVQEEGKKRKRKKKGLKC LEPSQSLTSPLEDKKDKKQKKSLDDALPVDLFPLQEAGRKTTLEENTNSGCSVSNKTTGILNCINVAVPIEKDMIPHACKKLLILDVNGLLADFVLHTER LATRKPDLYLRGKSVYRRPYCEDFIRFCLENFNVGVWSSRVKNNLTQVVRFLFKRTEHKLLFCWDRSHCTNTGLNTVEDKNKPLVLKELEKVWRKIPAGH GKAFDASNTLLLDDSPYKALCNPVHTAVFPHSYKCTDAEDSSLGPEGDLRKYLERLAKAPNVQEFVSQNPFGQRPITASDPDWPFYRQIIAKSNSKQTRC IQISKTKSIDANHHSQQHIRFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10017858 [exp]	0	1
AT3G09670			Tudor/PWWP/MBT superfamily pro...		Lus10016267 [exp]	1.0	0.8839
AT2G35540			DNAJ heat shock N-terminal dom...		Lus10039019 [exp]	5.1	0.8154
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Lus10001372 [exp]	6.9	0.8484
AT5G20600			unknown protein		Lus10011961 [exp]	10.3	0.8592
AT2G44020			Mitochondrial transcription te...		Lus10004614 [exp]	13.8	0.8209
AT5G41920	GRAS		GRAS family transcription fact...		Lus10010462 [exp]	15.9	0.8253
AT3G06270			Protein phosphatase 2C family ...		Lus10012768 [exp]	18.0	0.8131
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10003801 [exp]	20.6	0.7997
AT1G49870			unknown protein		Lus10013902 [exp]	23.2	0.7883
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10030325 [exp]	30.0	0.8411

Compare expression of checked genes

Lus10017858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.