Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26355 50 / 3e-08 SP1L1 SPIRAL1-like1 (.1) AT5G15600 50 / 4e-08 SP1L4 SPIRAL1-like4 (.1) AT1G69230 48 / 2e-07 SP1L2 SPIRAL1-like2 (.1.2) AT2G03680 48 / 2e-07 SKU6, SPR1 spiral1 (.1.2) AT3G02180 47 / 3e-07 SP1L3 SPIRAL1-like3 (.1.2.3) AT4G23496 45 / 1e-06 SP1L5 SPIRAL1-like5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034675 [exp] 69 / 4e-15 AT1G26355 127 / 5e-39 SPIRAL1-like1 (.1) Lus10037069 [exp] 54 / 1e-09 AT1G26355 147 / 2e-47 SPIRAL1-like1 (.1) Lus10000046 [exp] 54 / 2e-09 AT1G26355 146 / 7e-47 SPIRAL1-like1 (.1) Lus10036916 [exp] 54 / 2e-09 AT1G26355 146 / 7e-47 SPIRAL1-like1 (.1) Lus10026670 [exp] 51 / 1e-08 AT1G26355 150 / 1e-48 SPIRAL1-like1 (.1) Lus10026672 [exp] 51 / 2e-08 AT1G26355 149 / 4e-48 SPIRAL1-like1 (.1) Lus10004642 [exp] 51 / 2e-08 AT1G26355 147 / 2e-47 SPIRAL1-like1 (.1) Lus10032988 [exp] 51 / 2e-08 AT1G69230 99 / 8e-28 SPIRAL1-like2 (.1.2) Lus10024667 [exp] 44 / 2e-06 AT4G23496 74 / 2e-19 SPIRAL1-like5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G059100 [exp] 53 / 4e-09 AT1G26355 98 / 1e-27 SPIRAL1-like1 (.1) Potri.010G157600 [exp] 52 / 4e-09 AT1G26355 120 / 1e-36 SPIRAL1-like1 (.1) Potri.008G097000 [exp] 52 / 5e-09 AT1G26355 127 / 2e-39 SPIRAL1-like1 (.1) Potri.017G095200 [exp] 49 / 5e-08 AT1G69230 94 / 2e-26 SPIRAL1-like2 (.1.2) Potri.T124504 [exp] 50 / 2e-07 AT1G19270 182 / 3e-53 DA1 (.1) Potri.003G131600 [exp] 44 / 5e-06 AT4G23496 81 / 4e-21 SPIRAL1-like5 (.1) Potri.001G100100 [exp] 44 / 6e-06 AT4G23496 81 / 2e-21 SPIRAL1-like5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017859 pacid=23148825 polypeptide=Lus10017859 locus=Lus10017859.g ID=Lus10017859.BGIv1.0 annot-version=v1.0 ATGGGTCGTGGAGTTAGCAGTGGCGGAGGCCAGAGCTCTCTAGGGTACCTGTTTGGAAGTGGTGAGGCTCCCACTCCAAAGCCAGCTCCAGCAGCTGATA CTACTAACAAAGCTCCACAGAGAGTGGAACAGGCTGTGGCCGCTGAGCCTGCTCAGGCTGCTGCACCTTTAGCTCCGGCTCCGGAGGGCACCAAGCAGAT TCCAGCAGGTGTTGCTGTTGGTGGGAGCAAAACAAACAACTACTTCCGTGCTGATGGCCAGAACACTGGCAATTTCCTCACTGAAGTCATATCTGGACAA CACTCAGTCAGTGCGCTTAGTATCGATTCAATCCTGGCGTCCCTACCAACAGATTGGAATTCTACTGGGAGTCCTTGGTGTATATTAGTATGTTACTTGA CTCTGTTCTGGACCGGAACCTATGTTGTGGCTACTGCTGACAATGTTCTTCTCTCGCATCTTCTTGACCGACCATCAACAAAGGTACATGCGGCACCTGG AGGTGGGTCTTCTTTGGGCTATCTGTTTGGCGATGGCAAGCAGTGA
AA sequence Show only first row Show all	>Lus10017859 pacid=23148825 polypeptide=Lus10017859 locus=Lus10017859.g ID=Lus10017859.BGIv1.0 annot-version=v1.0 MGRGVSSGGGQSSLGYLFGSGEAPTPKPAPAADTTNKAPQRVEQAVAAEPAQAAAPLAPAPEGTKQIPAGVAVGGSKTNNYFRADGQNTGNFLTEVISGQ HSVSALSIDSILASLPTDWNSTGSPWCILVCYLTLFWTGTYVVATADNVLLSHLLDRPSTKVHAAPGGGSSLGYLFGDGKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69230		SP1L2	SPIRAL1-like2 (.1.2)		Lus10017859 [exp]	0	1
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10035723 [exp]	7.4	0.9207
AT3G28040			Leucine-rich receptor-like pro...		Lus10035687 [exp]	11.7	0.8940
AT3G50280			HXXXD-type acyl-transferase fa...		Lus10031149 [exp]	11.9	0.8943
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10020232 [exp]	12.6	0.8936
AT4G23820			Pectin lyase-like superfamily ...		Lus10003890 [exp]	16.0	0.8928
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031885 [exp]	16.7	0.8896
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10013715 [exp]	18.3	0.8906
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031315 [exp]	19.4	0.8903
					Lus10031884 [exp]	22.9	0.8741
AT1G10850			Leucine-rich repeat protein ki...		Lus10029075 [exp]	23.0	0.8702

Compare expression of checked genes

Lus10017859 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.