Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18610 443 / 5e-151 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74150 410 / 6e-138 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G07720 102 / 5e-24 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G05420 105 / 8e-24 ACBP4 acyl-CoA binding protein 4 (.1.2) AT4G04670 103 / 7e-23 Met-10+ like family protein / kelch repeat-containing protein (.1) AT2G36360 101 / 9e-23 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT5G04420 99 / 8e-22 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT5G27630 98 / 2e-21 ACBP5 acyl-CoA binding protein 5 (.1) AT5G18590 96 / 9e-21 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G48180 76 / 5e-15 NSP5 nitrile specifier protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031420 [exp] 124 / 4e-30 AT1G74150 179 / 3e-49 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10010913 [exp] 120 / 8e-29 AT1G18610 177 / 1e-48 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10029902 [exp] 104 / 2e-23 AT3G05420 1040 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10034159 [exp] 98 / 2e-21 AT2G36360 658 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) Lus10038666 [exp] 96 / 7e-21 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10043424 [exp] 95 / 2e-20 AT2G36360 625 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) Lus10002756 [exp] 94 / 5e-20 AT4G04670 1205 / 0.0 Met-10+ like family protein / kelch repeat-containing protein (.1) Lus10034163 [exp] 92 / 2e-19 AT5G18590 785 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10004499 [exp] 91 / 7e-19 AT3G05420 1019 / 0.0 acyl-CoA binding protein 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G059400 [exp] 556 / 0 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 533 / 0 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G013000 [exp] 158 / 1e-41 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G008200 [exp] 152 / 2e-39 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G026900 [exp] 103 / 4e-23 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.013G018800 [exp] 102 / 1e-22 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.014G168300 [exp] 97 / 6e-22 AT3G07720 484 / 1e-173 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.008G024700 [exp] 91 / 2e-19 AT2G36360 639 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) Potri.010G022000 [exp] 91 / 4e-19 AT5G18590 811 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G214900 [exp] 91 / 6e-19 AT5G18590 819 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF07646 [flax] [poplar] Kelch_2 Kelch motif CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10017860 pacid=23148809 polypeptide=Lus10017860 locus=Lus10017860.g ID=Lus10017860.BGIv1.0 annot-version=v1.0 ATGAGGTGGGAGAGACTCCAGCGGCAGCAGCGCTACGCCGCCGCTGGAAGCCTAGCTCCGCCGCTCGACGGATTGGATGGGCCGGGGAAGCTGTGGGGCC ACACCTGCAATTCGGTCAGAGGCGGGGGGCTTCTCTATGTTTTTGGTGGATATGGTAGGGACAACTGCCACACCAACCAAGTTCATGTGTTCGACACTGG TACTCATACTTGGAGTCAGCCTGAAATAAAGGGTACACCACCGATTCCAAGGGACAGCCATACTTGTACGACTGTTGGAGAACATTTGTATGTGTTTGGG GGAACTGATGGCACCAACCCTCTCAGGGACTTGCATGTATTGAATACTTCAACTCACACATGGGTATCTCCTACCATAAGAAACGATGGACCTGAAGCCC GGGAGGGACATAGTGCTACTGTTATTGGTAAACGTATCTACATATTCGGTGGCTGTGGAAAGTCTTCAGATACTAAGAATGAAGTATATTACAATGATCT GTACATATTGAATACAGAAACCCTAGTATGGAAGGAGCTGACTACTACAGGCCAGAAGCTGCCGCCTCGAGCGGGACATTCCACCGTCGCCTTAAGCAAA AACCTATTTGTTTTCGGAGGATATGCAGATTCTCAAAACCTATACAATGACTTATACATGCTTGATATTGAGTCTGGCATGTGGACGAAGGTAATGGCTA TCGGAGAAGGGCCATGTGCAAGATTTTCTGCGTCTTGTGACAGCTTGGATCCCTTGAAAGGAGGTGTTCTTGTGCTCATTGGTGGTTGCGATACGCATCT TGAGGCACTGAATGACATGTATTACTTACATACAGGACTGACCAGCATACAAGATAACTGGCGAGCAGAAAACTTATCTTGGAGAAGGCAGCTGAAGCTA AAATGCCAAGAACAGAGTTTAAGTTCAGATAAATCTCTGGTTAGAGCTGATTCAACAGCTAGTTTTCACGGAAACGTACCTTCTTATGGCCGACATGGTC CAGAGACGGTCCACTTCAATTTTCTGCAGGTTCACCAGGGGAAGAAAACTTTCCAAGCGACTGTTTCTGAAACCTTTCCATATGGGTATACAATCGAGAC CGTAATAGATGGAAAGCCTTTACGTGGTCTCCTATTCTCCAACAGACCAACCTCTCCTGTAGGAGACAATGTCGATAGGAAGAAGAGATCATCTGATGAA ATCGGTGGGGCTGTGTCGAATGGTGATTTTACGAGCAGAGCAAAGGCTTCCAGAACCTGTAGCAAGGATGAAATCGATCGGCCTCAAGTTGATGGTTCTC ATGAAAAGGAGTCTTTGATGCAAGATCTCAAGGCAGAAGGGTCAGTTGCTGCCAATATGAAGAGCGTAGCTTCATCTGATGCCTCTCAACCCCATGAGAG TGGTGCAAACCTAGAAGCAGCAGCTGCTCTGAACTTGAATGATGATATGAAAAGTGATGGACCGAACTATGGTGTCGATGTTCCAAAAGATAATCCAACC CCTATCGCTTTGTCCTTAAACCAAGGTGTGAATTTCAGAACTATGTAG
AA sequence Show only first row Show all	>Lus10017860 pacid=23148809 polypeptide=Lus10017860 locus=Lus10017860.g ID=Lus10017860.BGIv1.0 annot-version=v1.0 MRWERLQRQQRYAAAGSLAPPLDGLDGPGKLWGHTCNSVRGGGLLYVFGGYGRDNCHTNQVHVFDTGTHTWSQPEIKGTPPIPRDSHTCTTVGEHLYVFG GTDGTNPLRDLHVLNTSTHTWVSPTIRNDGPEAREGHSATVIGKRIYIFGGCGKSSDTKNEVYYNDLYILNTETLVWKELTTTGQKLPPRAGHSTVALSK NLFVFGGYADSQNLYNDLYMLDIESGMWTKVMAIGEGPCARFSASCDSLDPLKGGVLVLIGGCDTHLEALNDMYYLHTGLTSIQDNWRAENLSWRRQLKL KCQEQSLSSDKSLVRADSTASFHGNVPSYGRHGPETVHFNFLQVHQGKKTFQATVSETFPYGYTIETVIDGKPLRGLLFSNRPTSPVGDNVDRKKRSSDE IGGAVSNGDFTSRAKASRTCSKDEIDRPQVDGSHEKESLMQDLKAEGSVAANMKSVASSDASQPHESGANLEAAAALNLNDDMKSDGPNYGVDVPKDNPT PIALSLNQGVNFRTM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18610			Galactose oxidase/kelch repeat...		Lus10017860 [exp]	0	1
AT1G06230		GTE4	global transcription factor gr...		Lus10033623 [exp]	3.5	0.9057
AT5G20170			RNA polymerase II transcriptio...		Lus10019427 [exp]	4.5	0.8915
AT1G06230		GTE4	global transcription factor gr...		Lus10017661 [exp]	6.6	0.8792
AT5G18750			DNAJ heat shock N-terminal dom...		Lus10012795 [exp]	11.5	0.8827
AT3G14120			unknown protein		Lus10015675 [exp]	11.5	0.8980
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Lus10041587 [exp]	13.9	0.8981
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10042329 [exp]	19.4	0.8903
AT1G06230		GTE4	global transcription factor gr...		Lus10033624 [exp]	20.6	0.8804
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Lus10023288 [exp]	21.4	0.8812
AT1G73720		SMU1	SUPPRESSORS OF MEC-8 AND UNC-5...		Lus10038425 [exp]	23.0	0.8654

Compare expression of checked genes

Lus10017860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.