Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60920 300 / 4e-101 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G02210 288 / 2e-96 COBL1 COBRA-like protein 1 precursor (.1) AT3G29810 281 / 8e-94 COBL2 COBRA-like protein 2 precursor (.1) AT5G15630 231 / 2e-74 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT1G09790 214 / 1e-67 COBL6 COBRA-like protein 6 precursor (.1) AT5G49270 59 / 3e-10 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT4G16120 57 / 3e-09 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT3G20580 53 / 3e-08 COBL10 COBRA-like protein 10 precursor (.1) AT3G16860 49 / 6e-07 COBL8 COBRA-like protein 8 precursor (.1) AT4G27110 48 / 2e-06 COBL11 COBRA-like protein 11 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034671 [exp] 382 / 3e-131 AT5G60920 732 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10007986 [exp] 327 / 1e-111 AT5G60920 755 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10021144 [exp] 325 / 6e-111 AT5G60920 749 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10012598 [exp] 303 / 2e-102 AT3G02210 697 / 0.0 COBRA-like protein 1 precursor (.1) Lus10034379 [exp] 287 / 3e-96 AT3G02210 685 / 0.0 COBRA-like protein 1 precursor (.1) Lus10017863 [exp] 236 / 5e-76 AT5G15630 717 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034670 [exp] 235 / 1e-75 AT5G15630 715 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034666 [exp] 234 / 1e-75 AT5G15630 627 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10017866 [exp] 231 / 2e-74 AT5G15630 625 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G060000 [exp] 320 / 3e-109 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117100 [exp] 295 / 4e-99 AT3G02210 724 / 0.0 COBRA-like protein 1 precursor (.1) Potri.015G060100 [exp] 237 / 1e-76 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060200 [exp] 230 / 4e-74 AT5G15630 669 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117200 [exp] 230 / 4e-74 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098600 [exp] 225 / 2e-72 AT5G60920 601 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098700 [exp] 224 / 8e-72 AT5G60920 614 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G219200 [exp] 212 / 3e-67 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.012G062200 [exp] 207 / 3e-65 AT5G15630 586 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G167100 [exp] 169 / 1e-50 AT3G29810 407 / 2e-139 COBRA-like protein 2 precursor (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017861 pacid=23148846 polypeptide=Lus10017861 locus=Lus10017861.g ID=Lus10017861.BGIv1.0 annot-version=v1.0 ATGTCTCAGCGAGTGTTGGGGTTAGAGGAGGGAAACCTAGCCGACTTACGCGGTCCTGACACTCCGCATTTAGCCTCGGTGGTTTCAGGTCAAGGAAAAC AAGATCTCGCACCTTTGGTGCAGTGTACCAAGCATATGTGTCCGATCCGGATCCATTGGCATGTGAAGCTTAACTACAAGGAGTACTGGAGAGTGAAAGT GACCATCACAAATTTCGATTACAGAATGAATTACTACACACAGTGGAATCTAGTGGTGCAACACCCCAACTTTGCCAACCTTACCCAGCTTTTCAGCTTC AACTATAAGTCCTTAACTCCTTATGATGGTTTCAATGATACATCTATGTTATGGGGAGTCAAGTTCTACAACGATTTTCTTTCGCAAGCTGGGCCCTTGG GGAATGTCCAGTCCGAGCTTCTATTCCGGAAAGATTCATCAACTTTCACATTCGAGAAAGGATGGGCTTTCCCCAGGAGGATATACTTTAATGGTGACAA CTGTGTGATGCCTCCGCCAGATGCATATCCATGGTCGCCTAATGATGGTCACAGATCATCAACCATGTCTCTACTTCGACCTCTAGGCGTAGCATTGTTG TCTATCATGATCCTCGTAGCTTATGCGTGA
AA sequence Show only first row Show all	>Lus10017861 pacid=23148846 polypeptide=Lus10017861 locus=Lus10017861.g ID=Lus10017861.BGIv1.0 annot-version=v1.0 MSQRVLGLEEGNLADLRGPDTPHLASVVSGQGKQDLAPLVQCTKHMCPIRIHWHVKLNYKEYWRVKVTITNFDYRMNYYTQWNLVVQHPNFANLTQLFSF NYKSLTPYDGFNDTSMLWGVKFYNDFLSQAGPLGNVQSELLFRKDSSTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWSPNDGHRSSTMSLLRPLGVALL SIMILVAYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60920		COB	COBRA-like extracellular glyco...		Lus10017861 [exp]	0	1
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10024263 [exp]	3.5	0.9245
AT4G25030			unknown protein		Lus10034730 [exp]	3.9	0.8752
AT2G17080			Arabidopsis protein of unknown...		Lus10012368 [exp]	4.5	0.8923
AT5G48290			Heavy metal transport/detoxifi...		Lus10025181 [exp]	4.7	0.9212
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10014163 [exp]	4.9	0.9200
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Lus10036671 [exp]	4.9	0.8853
AT5G54490		PBP1	pinoid-binding protein 1 (.1)		Lus10036734 [exp]	6.7	0.8882
AT1G15380		GLYI4	glyoxylase I 4, Lactoylglutath...		Lus10025971 [exp]	6.7	0.8830
AT4G11170			Disease resistance protein (TI...		Lus10010222 [exp]	7.0	0.8867
AT2G22590			UDP-Glycosyltransferase superf...		Lus10043446 [exp]	9.7	0.8662

Compare expression of checked genes

Lus10017861 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.