Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60960 631 / 0 PNM1 PPR protein localized to the nucleus and mitochondria 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61370 149 / 2e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49730 127 / 5e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G04130 121 / 2e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G22670 118 / 4e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74900 116 / 5e-28 OTP43 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G71060 116 / 1e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G41170 112 / 2e-26 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G65820 112 / 3e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G20300 111 / 5e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034673 [exp] 921 / 0 AT5G60960 639 / 0.0 PPR protein localized to the nucleus and mitochondria 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000207 [exp] 150 / 1e-39 AT5G61370 566 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021630 [exp] 150 / 1e-39 AT5G61370 566 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000564 [exp] 147 / 1e-38 AT5G61370 566 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039021 [exp] 138 / 3e-35 AT3G49730 215 / 5e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011459 [exp] 135 / 5e-34 AT1G20300 711 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001633 [exp] 125 / 1e-30 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042307 [exp] 123 / 5e-30 AT1G74900 549 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 122 / 4e-29 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G133400 [exp] 688 / 0 AT5G60960 637 / 0.0 PPR protein localized to the nucleus and mitochondria 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G068400 [exp] 154 / 4e-41 AT5G61370 580 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G245400 [exp] 136 / 2e-34 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G247200 [exp] 130 / 2e-32 AT5G43820 634 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G084000 [exp] 129 / 5e-32 AT3G22670 489 / 3e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G055500 [exp] 123 / 4e-30 AT3G04130 566 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G114700 [exp] 122 / 8e-30 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G083900 [exp] 123 / 9e-30 AT3G22670 439 / 1e-148 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G066700 [exp] 122 / 2e-29 AT1G20300 213 / 5e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 122 / 2e-29 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10017862 pacid=23148784 polypeptide=Lus10017862 locus=Lus10017862.g ID=Lus10017862.BGIv1.0 annot-version=v1.0 ATGCCTCCATCGTCGTCCTCCTTACATCTCCGGAGGATCCTCCGGTACTGCCTGTCACATTGCTCTTCTCCTGCACGACTTCCTCCTTCGGCTTCCACTC ACCTGTTCCTTTCTCATTCCCTCTCAAAGTACTTCTCATCTCAATCCTCGATCTCGCCTACTTCCACTCCGGACGTCGATCCAGTAGCTCTGTCTCTCTC CGCTGAGCTAGTTAAAGATTCAGGCGCCGAATCTCTACCAACCCCGCAGAGACTGAATCTCAGCTTCTCCCATATTGCCGGCTCAATTACTCCCTCCTTG ATTTCGCAAACGCTCAATCTCTCACCCGATGCCGGCCGCGCTGTTCTAGGTTTTCACCAATGGCTGGTTAGTAACCCTAATTTTAAGCACACGGATGAGA CCGTTTCGTTTTTCGTTGATTATTTTGGTAGAAGGAAAGATTTCAAGGCGACCGATGAGTTGCTTGTTGATGCGAAGAGTGTTGTTGGTCCTAAAACATT CGAGTCCATGGTTGATAGGCTTGTTAGGGCAGGGAGGCCTAAGCAGGTTGTTGAGTTATTTGGGAAGATGGAGGCTGATTATGGAATGAAGCGAGATAGA GAGTTGCTAACATTGGTAGTGAGTAAGTTATGTGAACATGGCCATTCGAATTATGCTGAGAAGATGGTGAAAAGCTTAGCTAATGAGATATTCCCGGATG AGGTTATCTGTGATATGCTTATCAAAGGTTGGTGTGTTGATGGGAAACTGGATGAGGCTAAGAGATTAGCAGGAGAGATGTTCAGGGGTGGGTTTGAGCT AAGTGTAGTTTCGTACAATGCCCTCCTGGACTGTGTTTGCAAGCTCTGCAGGGAAAAGGACCCTTTCAGAATGAAGTCTGAAATTGAGAAAGTTTTGGTT GAGATGGACGTTCGAGGGGTTCCGAGAGATGTGGAGACATTCAATGTGCTGTTCACTAACATGTGCAAGTTACGGCAAACTCAGGATGCAATGGACTTGT TCCACAGGATGGGAGAGTGGGGATGCTATCCCAACGAGACCACGTTTCTGGTTTTGATTAAGAGCTTGTATCAGGCAGCAAGAGTCGGAGAGGGAGATGA GATGATCGATCGGATGAAGAGTGCTGGTTTTGGGGATAAGCTTGATACGAAAGTGTATTATGGGTTCTTAAAGATTTTGTGCGGGATTGAGAGGGTTGAA CATGCCATGACTGTGTTCGAGATGATGAAGGCGGACGGTTGCAAACCTGGATTGAAGACTTATGAGCTGTTGATGGAGAAATGGTGTGCCCATAACCGTA TTGACAAAGCAAACTCTCTATACAATGTAGCATTAAGTAATGGAGTCCCCGTCACGCCCAAAGAGTACAAGATTGACCCTAGGCACTTGCCCAAGGCTAA GGCTGCAAAGAAGGGGAAAAAGAGGGAGACATTGCCTGAAAAGACCGCAAGGAAGAAGAGGCGCCTCAAGCAGATTAAACTCAGCTTTGTCAAGAAACCG AAGAAAGGAATGCGTAGGGCCTATTAA
AA sequence Show only first row Show all	>Lus10017862 pacid=23148784 polypeptide=Lus10017862 locus=Lus10017862.g ID=Lus10017862.BGIv1.0 annot-version=v1.0 MPPSSSSLHLRRILRYCLSHCSSPARLPPSASTHLFLSHSLSKYFSSQSSISPTSTPDVDPVALSLSAELVKDSGAESLPTPQRLNLSFSHIAGSITPSL ISQTLNLSPDAGRAVLGFHQWLVSNPNFKHTDETVSFFVDYFGRRKDFKATDELLVDAKSVVGPKTFESMVDRLVRAGRPKQVVELFGKMEADYGMKRDR ELLTLVVSKLCEHGHSNYAEKMVKSLANEIFPDEVICDMLIKGWCVDGKLDEAKRLAGEMFRGGFELSVVSYNALLDCVCKLCREKDPFRMKSEIEKVLV EMDVRGVPRDVETFNVLFTNMCKLRQTQDAMDLFHRMGEWGCYPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGFGDKLDTKVYYGFLKILCGIERVE HAMTVFEMMKADGCKPGLKTYELLMEKWCAHNRIDKANSLYNVALSNGVPVTPKEYKIDPRHLPKAKAAKKGKKRETLPEKTARKKRRLKQIKLSFVKKP KKGMRRAY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60960		PNM1	PPR protein localized to the n...		Lus10017862 [exp]	0	1
AT2G17670			Tetratricopeptide repeat (TPR)...		Lus10028379 [exp]	1.4	0.9388
AT3G02490			Pentatricopeptide repeat (PPR)...		Lus10032092 [exp]	1.4	0.9384
AT5G05520			Outer membrane OMP85 family pr...		Lus10007514 [exp]	2.0	0.9311
AT1G02370			Tetratricopeptide repeat (TPR)...		Lus10004173 [exp]	2.2	0.9288
AT2G37230			Tetratricopeptide repeat (TPR)...		Lus10021645 [exp]	4.6	0.8990
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10002951 [exp]	5.3	0.8881
AT2G17670			Tetratricopeptide repeat (TPR)...		Lus10041832 [exp]	5.5	0.9124
AT4G20980			Eukaryotic translation initiat...		Lus10011171 [exp]	5.5	0.9286
AT3G57490			Ribosomal protein S5 family pr...		Lus10009952 [exp]	5.5	0.9348
AT2G31240			Tetratricopeptide repeat (TPR)...		Lus10033883 [exp]	7.2	0.9058

Compare expression of checked genes

Lus10017862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.