Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15630 717 / 0 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT5G60920 612 / 0 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G02210 600 / 0 COBL1 COBRA-like protein 1 precursor (.1) AT3G29810 589 / 0 COBL2 COBRA-like protein 2 precursor (.1) AT1G09790 427 / 2e-147 COBL6 COBRA-like protein 6 precursor (.1) AT5G60950 217 / 1e-68 COBL5 COBRA-like protein 5 precursor (.1) AT4G16120 142 / 1e-36 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT5G49270 139 / 2e-35 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G16860 124 / 2e-30 COBL8 COBRA-like protein 8 precursor (.1) AT3G20580 124 / 3e-30 COBL10 COBRA-like protein 10 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034670 [exp] 928 / 0 AT5G15630 715 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10035131 [exp] 686 / 0 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10031972 [exp] 682 / 0 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10017866 [exp] 637 / 0 AT5G15630 625 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034666 [exp] 636 / 0 AT5G15630 627 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034671 [exp] 618 / 0 AT5G60920 732 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10007986 [exp] 610 / 0 AT5G60920 755 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10021144 [exp] 610 / 0 AT5G60920 749 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10012598 [exp] 584 / 0 AT3G02210 697 / 0.0 COBRA-like protein 1 precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G060100 [exp] 780 / 0 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060200 [exp] 675 / 0 AT5G15630 669 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117200 [exp] 654 / 0 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060000 [exp] 608 / 0 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117100 [exp] 598 / 0 AT3G02210 724 / 0.0 COBRA-like protein 1 precursor (.1) Potri.012G062200 [exp] 594 / 0 AT5G15630 586 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098700 [exp] 539 / 0 AT5G60920 614 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098600 [exp] 525 / 0 AT5G60920 601 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G219200 [exp] 461 / 6e-161 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.004G167100 [exp] 383 / 4e-130 AT3G29810 407 / 2e-139 COBRA-like protein 2 precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04833 [flax] [poplar] COBRA COBRA-like protein
Representative CDS sequence Show only first row Show all	>Lus10017863 pacid=23148856 polypeptide=Lus10017863 locus=Lus10017863.g ID=Lus10017863.BGIv1.0 annot-version=v1.0 ATGGATGGTGAGGTACAACATAGTTACCAATGCCAAAAACCAACCTTATCAGCATCACAATTGAAGTTAATGTTCATGGTTGCTCTCGTTTTCGCTGTGA TGATTCATCATCCTGCAGGTGCATATGATCCATTGGATCCAAATGGGAACATAACTATCAAATGGGATGTCATGTCTTGGACTCCAGATGGTTATGTGGC CACGGTAACCATGACCAACTTCCAGATGTCGAGGCACATAATGAGCCCCGGCTGGACACTGTCGTGGTCATGGGCTAAGAAAGAAGTGATATGGTCAATG GTGGGAGCTCAAACCACAGAGCAAGGTGACTGTTCTAAGTTCAAAGGAAATGTACCTCATTGCTGTGAGAAGACTCCAACAGTTGTGGACTTGCTCCCTG GAGTTCCTTACAACCAGCAGTATTCCAATTGTTGCAAAGGCGGAGTTATGGCAGCATGGGGACAGGACCCTTCAGCTGCAGTCTCAGCTTTCCAGATCAG CGTTGGTCAGGGTGGAACATCCAATAAGACGGTCAAACTTCCAAAGAACTTCACTTTGCTTGGTCCTGGATTAGGGTATACTTGTGGCCCTGCAAAGGTT GTTCCTTCTACCGTGTTCATGACTGCGGATCGCAGGCGAAAAACACAAGCACTTATGACTTGGAATGTGACATGTACATACTCACAGATCCTAGCCTCCA GACATCCAAGCTGCTGTGTCTCATTCTCAACATTCTACAATGAGACTATCACTCCTTGTCCTTCCTGTGCCTGTGGTTGTCATAGCAAAAGCAGCTGTAT AACGAGCAATTCAAAGGAAGCACATAAGAGAGGAGTGAACACGCCGAAGAAGGACAACACTCCACTGCTGCAATGCACTCGGCATATGTGCCCCGTTCGA ATCCACTGGCATGTGAAGGTGAACTACAAAGACTACTGGCGAGCGAAGATTGCAGTGACCAACTTCAACTACAAGATGAACTACACACAATGGACTCTCG TCGTTCAGCATCCTAATCTCAATAATGTCACTCAGGTCTTTAGCTTCGATTACAAGCCTCTTGTCGCATACCAATCCATAAATGACACTGGGATGTTCTA CGGCATGAAGTTTTACAACGATCTTATCATGGAAGCTGGACCTTTCGGGAACGTGCAATCTGAAGTGCTTATGAGGAAGGACAAGGATACCTTCAGCCTC AAGCAAGGATGGGCGTTTCCAAGGAAAGTTTACTTCAATGGAGACGAATGCATGCTTCCGCCACCTGATGCGTATCCTTACCTCCCAAATGTTGCTTCTC CAATCCAAGTCCCATTTCGGACAATCGTAGCTTGCTTCCTCCTGATGCTTCAATACATTCTGTGA
AA sequence Show only first row Show all	>Lus10017863 pacid=23148856 polypeptide=Lus10017863 locus=Lus10017863.g ID=Lus10017863.BGIv1.0 annot-version=v1.0 MDGEVQHSYQCQKPTLSASQLKLMFMVALVFAVMIHHPAGAYDPLDPNGNITIKWDVMSWTPDGYVATVTMTNFQMSRHIMSPGWTLSWSWAKKEVIWSM VGAQTTEQGDCSKFKGNVPHCCEKTPTVVDLLPGVPYNQQYSNCCKGGVMAAWGQDPSAAVSAFQISVGQGGTSNKTVKLPKNFTLLGPGLGYTCGPAKV VPSTVFMTADRRRKTQALMTWNVTCTYSQILASRHPSCCVSFSTFYNETITPCPSCACGCHSKSSCITSNSKEAHKRGVNTPKKDNTPLLQCTRHMCPVR IHWHVKVNYKDYWRAKIAVTNFNYKMNYTQWTLVVQHPNLNNVTQVFSFDYKPLVAYQSINDTGMFYGMKFYNDLIMEAGPFGNVQSEVLMRKDKDTFSL KQGWAFPRKVYFNGDECMLPPPDAYPYLPNVASPIQVPFRTIVACFLLMLQYIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10017863 [exp]	0	1
AT2G28315			Nucleotide/sugar transporter f...		Lus10041315 [exp]	2.6	0.9852
AT1G13635			DNA glycosylase superfamily pr...		Lus10036835 [exp]	3.2	0.9827
AT3G61750			Cytochrome b561/ferric reducta...		Lus10012625 [exp]	3.7	0.9849
AT2G28315			Nucleotide/sugar transporter f...		Lus10041314 [exp]	5.5	0.9845
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Lus10035836 [exp]	5.7	0.9838
					Lus10043486 [exp]	6.3	0.9784
AT5G37478			TPX2 (targeting protein for Xk...		Lus10007382 [exp]	6.7	0.9803
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Lus10014238 [exp]	6.9	0.9754
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Lus10019917 [exp]	6.9	0.9821
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10043061 [exp]	8.0	0.9806

Compare expression of checked genes

Lus10017863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.