Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47420 524 / 0 DIM1A adenosine dimethyl transferase 1A, Ribosomal RNA adenine dimethylase family protein (.1) AT5G66360 280 / 3e-92 DIM1B adenosine dimethyl transferase 1B, Ribosomal RNA adenine dimethylase family protein (.1.2) AT1G01860 99 / 3e-23 PFC1 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034669 [exp] 648 / 0 AT2G47420 527 / 0.0 adenosine dimethyl transferase 1A, Ribosomal RNA adenine dimethylase family protein (.1) Lus10041797 [exp] 250 / 2e-80 AT5G66360 436 / 8e-153 adenosine dimethyl transferase 1B, Ribosomal RNA adenine dimethylase family protein (.1.2) Lus10009319 [exp] 97 / 1e-21 AT1G01860 417 / 4e-137 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1) Lus10015847 [exp] 56 / 8e-09 AT1G01860 216 / 6e-70 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G121200 [exp] 567 / 0 AT2G47420 526 / 0.0 adenosine dimethyl transferase 1A, Ribosomal RNA adenine dimethylase family protein (.1) Potri.018G018900 [exp] 256 / 1e-82 AT5G66360 436 / 8e-153 adenosine dimethyl transferase 1B, Ribosomal RNA adenine dimethylase family protein (.1.2) Potri.014G077100 [exp] 105 / 1e-25 AT1G01860 437 / 1e-154 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1) Potri.006G264101 [exp] 79 / 9e-18 AT5G66360 120 / 1e-33 adenosine dimethyl transferase 1B, Ribosomal RNA adenine dimethylase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00398 [flax] [poplar] RrnaAD Ribosomal RNA adenine dimethylase
Representative CDS sequence Show only first row Show all	>Lus10017864 pacid=23148798 polypeptide=Lus10017864 locus=Lus10017864.g ID=Lus10017864.BGIv1.0 annot-version=v1.0 ATGGCGGGAGGCAAGATACGGAAGGAGAAGCCGAAGGCGACGTCGACGAATCACTACCAAGGAGGCATATCGTTTCACAAATCCAAAGGCCAGCACATCC TCAAGAACCCTATGCTTGTCGACACCATAGTCCAGAAATCCGGAATCAAGAGCACCGATGTCATTCTCGAAATCGGTCCCGGTACCGGAAATCTCACCAA GAAGCTCCTCGAAGCCGGCAAATCCGTCACCGCTATCGAGCTCGACTCTCGCATGGTCCTCGAGCTTACACGCCGGTTCCAGGGCACTCCTTTCGCCACC AAGTTGAAGGTCATTCAAGGCGATGTGTTGAAGACCGAGCTTCCCTATTTCGATATATGTGTGGCCAACATCCCTTACCAAATCTCGTCTCCCCTAACAT TCAAGCTACTCAACCATCAGCCTTCCTTCAGGTGTGCAGTTATAATGTACCAGAGGGAGTTTGCAATGAGACTTGTTGCTCAGCCAGGTGACAACTTGTA CTGCCGTCTCTCTGTCAATACACAACTGTACGCGAGGGTCTCCCATCTTCTCAAAGTCGGGAAGAACAATTTCCGGCCTCCACCTAAGGTCGATTCCTCC GTGGTTCGAATTGAGCCCCGGAAGCCACGCCCCCAAGTTAACCCTAAGGAATGGGATGGATTCATACGGATTTGTTTCATCCGCAAGAACAAAACTCTTG GCGCAATATTTAGAATAAAGAATGTTCTTTCTTTGCTGGAGAAGAACTACAAAACCCTCCAGGCACTCCGTCCAGCGGAGAACGCAGATGGTGAAATGGA TATCTCGGGACTGGGGGATACTGGAGGGGACCAGAGCATGGACATGTGTGATGACTCCGATGATGAAATGGAGATGGAGGATAAGGAAGCAGTGGACGAG AAATCGGAATTCAAAGAAAAAGTTATTGCTGTGCTTGAGGAGCACAAGTTTCTTGATCGGAGGTCATCTAAGTTGTCGCAAGAAGAGTTCTTGTTTCTGC TCTCCCGATTCAACATGGCTGGCATCCACTTCTCCTGA
AA sequence Show only first row Show all	>Lus10017864 pacid=23148798 polypeptide=Lus10017864 locus=Lus10017864.g ID=Lus10017864.BGIv1.0 annot-version=v1.0 MAGGKIRKEKPKATSTNHYQGGISFHKSKGQHILKNPMLVDTIVQKSGIKSTDVILEIGPGTGNLTKKLLEAGKSVTAIELDSRMVLELTRRFQGTPFAT KLKVIQGDVLKTELPYFDICVANIPYQISSPLTFKLLNHQPSFRCAVIMYQREFAMRLVAQPGDNLYCRLSVNTQLYARVSHLLKVGKNNFRPPPKVDSS VVRIEPRKPRPQVNPKEWDGFIRICFIRKNKTLGAIFRIKNVLSLLEKNYKTLQALRPAENADGEMDISGLGDTGGDQSMDMCDDSDDEMEMEDKEAVDE KSEFKEKVIAVLEEHKFLDRRSSKLSQEEFLFLLSRFNMAGIHFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47420		DIM1A	adenosine dimethyl transferase...		Lus10017864 [exp]	0	1
AT4G00090			Transducin/WD40 repeat-like su...		Lus10030275 [exp]	5.5	0.8355
AT1G05810		ARA, Ara-1, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10038226 [exp]	6.2	0.8693
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10000275 [exp]	9.2	0.8349
AT4G16490			ARM repeat superfamily protein...		Lus10038812 [exp]	9.5	0.8326
AT3G53380			Concanavalin A-like lectin pro...		Lus10019923 [exp]	9.6	0.8599
AT3G55550			Concanavalin A-like lectin pro...		Lus10004709 [exp]	20.5	0.7699
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10041307 [exp]	21.3	0.8436
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10031695 [exp]	26.2	0.8082
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10007979 [exp]	30.9	0.8404
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Lus10017540 [exp]	35.8	0.7791

Compare expression of checked genes

Lus10017864 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.