Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15630 625 / 0 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT5G60920 588 / 0 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G29810 588 / 0 COBL2 COBRA-like protein 2 precursor (.1) AT3G02210 574 / 0 COBL1 COBRA-like protein 1 precursor (.1) AT1G09790 423 / 2e-145 COBL6 COBRA-like protein 6 precursor (.1) AT5G60950 201 / 4e-62 COBL5 COBRA-like protein 5 precursor (.1) AT4G16120 130 / 2e-32 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT5G49270 127 / 2e-31 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G20580 114 / 6e-27 COBL10 COBRA-like protein 10 precursor (.1) AT3G16860 113 / 1e-26 COBL8 COBRA-like protein 8 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034666 [exp] 877 / 0 AT5G15630 627 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10017863 [exp] 636 / 0 AT5G15630 717 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034670 [exp] 633 / 0 AT5G15630 715 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10031972 [exp] 610 / 0 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10035131 [exp] 610 / 0 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034671 [exp] 597 / 0 AT5G60920 732 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10021144 [exp] 595 / 0 AT5G60920 749 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10007986 [exp] 594 / 0 AT5G60920 755 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10012598 [exp] 573 / 0 AT3G02210 697 / 0.0 COBRA-like protein 1 precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G060200 [exp] 673 / 0 AT5G15630 669 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060100 [exp] 628 / 0 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060000 [exp] 590 / 0 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117200 [exp] 586 / 0 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117100 [exp] 584 / 0 AT3G02210 724 / 0.0 COBRA-like protein 1 precursor (.1) Potri.012G062200 [exp] 564 / 0 AT5G15630 586 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098700 [exp] 524 / 0 AT5G60920 614 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098600 [exp] 499 / 5e-176 AT5G60920 601 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G219200 [exp] 452 / 2e-157 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.004G167100 [exp] 382 / 2e-129 AT3G29810 407 / 2e-139 COBRA-like protein 2 precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04833 [flax] [poplar] COBRA COBRA-like protein
Representative CDS sequence Show only first row Show all	>Lus10017866 pacid=23148838 polypeptide=Lus10017866 locus=Lus10017866.g ID=Lus10017866.BGIv1.0 annot-version=v1.0 ATGGATTCATCTAGAGGAGTTTCTGTTCTATTAGCTTGTGGGTTTGTGTTCATCTTGATGTTCCCTCGTAATTCAGTGGATGCATATGACATGCTGGATC CAAATGGGAACATCACAATCAAGTGGGATGTCATGTCATGGACTCCTGATGGTTATGTGGCAGTTGTGACAATGACCAACTTCCAGATGTACCGCCACAT AACGAGCCCCGGATGGAGAATAGGATGGACATGGACTAAGAAGGAGGTAATATGGTCGATAGTGGGAGCTCAAACAACAGAACAAGGAGACTGTTCGAAA TTCAGAAGCACAATCCCACATTGCTGCAGCAAGAACCCAACTGTGGTTGACTTGCTCCCTGGTGTGCCTTACAACCAACAAATCTCAAACTGCTGCAAAG GCGGTGTCGTTTCGTCCTATGGACAAGACCCTTCTGCTGCTGTCTCTTCATTTCAGGTCAGTGTTGGCAGGTCTGGTACCACCAATAAAACAGTGAAGCT CCCAACCAACTTCACTTTGATGGGTCCTGGACTTGGCTACACTTGCAGCCAGGCCAAGATCGTTCCCCGGACTGTTTTCATGAGCTCAGATGGTCGTCGA AAGACTCAATCCATGATGACATGGAATGTGACGTGTACTTACTCTCAGGTGCTGGCATCTCAGCATCCAAAGTGCTGTGTTTCAATGTCATCCTTTTACA ACTCTACAATCACACCTTGTCCTTCCTGTGCTTGTGGCTGTAACAAGAACAGTAACAATTGTGTCAGGAGTAATGATTCGAAGATTTTGAGTGTCGTTGG AGGAGCAAACAAACACCCATTGAGCTCCATTGGTTCCCCACTGTTAGAATGCACACAGCACATGTGTCCTATAAGGGTCCATTGGCATGTAAAGCTGAAC TACAAGCAGTATTGGAGAGTGAAGATGTCCATCACTAATTTCGACCACATGATGAACTACTCACAATGGACACTAGTAGTTCAGCACCCGAATTTCAACA ACCTCACTGAAGCTTTTAGCTTCGGGTACAAGCCACTTCACCCCTACAAATCCAGCAATGATTCGGGGATGTTTTTTGGACTAAAGTTCTTCAACGATTT CCTGAACCAAGCGGGTCCGGAAGGGAATGTACAGTCGGAGCTGTTACTTGAGAAAGATGTGGATACCTTCACGTTGAAGCAAGGGTGGGCGTTTCCAAGG AAAGTTTACTTCAATGGGGATGAATGCATGATGCCTTCCCCTGAAGATTACCCATTTCTACCTAATTCTGCTCCTCCTCGGAGGGACTACTATCATATCA TCACGATTTTGCCTCTGCTCGCGTCCACCTTGGTCTTGAATCATCATCGTTTGCTGCTGTGGTGA
AA sequence Show only first row Show all	>Lus10017866 pacid=23148838 polypeptide=Lus10017866 locus=Lus10017866.g ID=Lus10017866.BGIv1.0 annot-version=v1.0 MDSSRGVSVLLACGFVFILMFPRNSVDAYDMLDPNGNITIKWDVMSWTPDGYVAVVTMTNFQMYRHITSPGWRIGWTWTKKEVIWSIVGAQTTEQGDCSK FRSTIPHCCSKNPTVVDLLPGVPYNQQISNCCKGGVVSSYGQDPSAAVSSFQVSVGRSGTTNKTVKLPTNFTLMGPGLGYTCSQAKIVPRTVFMSSDGRR KTQSMMTWNVTCTYSQVLASQHPKCCVSMSSFYNSTITPCPSCACGCNKNSNNCVRSNDSKILSVVGGANKHPLSSIGSPLLECTQHMCPIRVHWHVKLN YKQYWRVKMSITNFDHMMNYSQWTLVVQHPNFNNLTEAFSFGYKPLHPYKSSNDSGMFFGLKFFNDFLNQAGPEGNVQSELLLEKDVDTFTLKQGWAFPR KVYFNGDECMMPSPEDYPFLPNSAPPRRDYYHIITILPLLASTLVLNHHRLLLW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10017866 [exp]	0	1
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10034666 [exp]	1.0	0.9365
AT3G29000			Calcium-binding EF-hand family...		Lus10026974 [exp]	10.4	0.8452
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036942 [exp]	16.9	0.8644
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10003642 [exp]	18.5	0.8413
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032347 [exp]	19.9	0.8691
AT3G59440			Calcium-binding EF-hand family...		Lus10020171 [exp]	22.8	0.8335
AT4G25400	bHLH	bHLH118	basic helix-loop-helix (bHLH) ...		Lus10031675 [exp]	22.8	0.8396
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10018711 [exp]	22.9	0.7873
					Lus10028788 [exp]	26.5	0.8236
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10039639 [exp]	27.5	0.7929

Compare expression of checked genes

Lus10017866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.