Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15800 213 / 2e-69 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) AT3G02310 202 / 2e-65 MADS AGL4, SEP2 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) AT2G03710 193 / 1e-61 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT1G24260 191 / 4e-61 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G45650 155 / 8e-47 MADS AGL6 AGAMOUS-like 6 (.1) AT5G60910 138 / 3e-40 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2) AT1G69120 134 / 1e-38 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) AT1G26310 134 / 1e-38 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT3G61120 132 / 5e-38 MADS AGL13 AGAMOUS-like 13 (.1) AT3G58780 131 / 1e-37 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034663 [exp] 351 / 1e-123 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10005080 [exp] 223 / 2e-73 AT3G02310 372 / 1e-131 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10034371 [exp] 216 / 1e-70 AT3G02310 364 / 3e-128 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10003124 [exp] 192 / 3e-61 AT1G24260 355 / 6e-125 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10015765 [exp] 192 / 5e-61 AT1G24260 347 / 5e-122 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10037040 [exp] 178 / 1e-55 AT1G24260 350 / 7e-123 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10003125 [exp] 171 / 4e-54 AT1G24260 290 / 9e-101 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10004638 [exp] 167 / 6e-52 AT3G02310 246 / 2e-82 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10026678 [exp] 155 / 3e-47 AT5G15800 225 / 3e-74 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G115500 [exp] 223 / 1e-73 AT3G02310 357 / 4e-126 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.017G099700 [exp] 214 / 5e-70 AT3G02310 372 / 8e-132 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.008G098400 [exp] 212 / 3e-69 AT5G15800 275 / 2e-93 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Potri.003G169600 [exp] 194 / 5e-62 AT1G24260 359 / 7e-127 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.001G058400 [exp] 184 / 3e-58 AT1G24260 362 / 8e-128 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.014G074100 [exp] 150 / 3e-45 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.015G134800 [exp] 147 / 2e-43 AT2G45650 209 / 2e-67 AGAMOUS-like 6 (.1) Potri.012G132600 [exp] 145 / 2e-43 AT2G45650 182 / 3e-57 AGAMOUS-like 6 (.1) Potri.012G062300 [exp] 142 / 4e-42 AT5G60910 288 / 5e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.010G154100 [exp] 132 / 6e-38 AT1G69120 324 / 7e-113 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10017870 pacid=23148863 polypeptide=Lus10017870 locus=Lus10017870.g ID=Lus10017870.BGIv1.0 annot-version=v1.0 ATGGGGAGAGGAAGGGTGGAGCTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTTACATTTGCTAAGAGGAGAAATGGTCTACTTAAAAAGGCTTATG AGCTCTCTGTGCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCCAACCGCGGCAAGCTCTATGAATTCTGCAGCTCCCCTAGGAACCTCCTAGGAGA AGATCTGGGAAGCTTGAACACAAAAGATCTGGAGCAGCTTGAGCATCAGCTGGAATTTTCCTTGAAGCACATCAGGTCCACTAAGACTCAGTTCATGCTT GATCAGCTTACTGAACTTCACAACAAGGAACAAGACCTACTTGAGACCAACAAAGCCCTCAGAAGGAAGCTGGAAGAAAGCAGTATACATGAAATCCCTG TAAGAGTGGTGGCATGGGAAGATGCATCATCGTCAGGCGGTAGAGGGAACGTCCATAACAATATTCCATACACTCACCAGCTTCTTCCCTCTCAACATCA TCAAAATCATCATCCTTGCTCAGAAGCATTCTTCCATCCCTTGCCTCCAACCTCCACTCTCCACATGGGATACAGCACCATGGGAGGAGATCATGAGATG AATGAGGTTGGATGTTCAACACATGGTTCCAATGGGTTTATCCCTGGATGGATGCTCTGA
AA sequence Show only first row Show all	>Lus10017870 pacid=23148863 polypeptide=Lus10017870 locus=Lus10017870.g ID=Lus10017870.BGIv1.0 annot-version=v1.0 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPRNLLGEDLGSLNTKDLEQLEHQLEFSLKHIRSTKTQFML DQLTELHNKEQDLLETNKALRRKLEESSIHEIPVRVVAWEDASSSGGRGNVHNNIPYTHQLLPSQHHQNHHPCSEAFFHPLPPTSTLHMGYSTMGGDHEM NEVGCSTHGSNGFIPGWML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10017870 [exp]	0	1
AT4G33800			unknown protein		Lus10006135 [exp]	6.1	0.9751
AT3G18960	B3		AP2/B3-like transcriptional fa...		Lus10027943 [exp]	9.4	0.9681
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Lus10005080 [exp]	12.2	0.9628
					Lus10029057 [exp]	13.0	0.9027
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10004637 [exp]	14.1	0.9597
AT5G15800	MADS	AGL2, SEP1	SEPALLATA1, AGAMOUS-like 2, K-...		Lus10034663 [exp]	15.8	0.9596
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10003125 [exp]	17.5	0.9592
AT5G20240	MADS	PI, PISTILLATA	PISTILLATA, K-box region and M...		Lus10029719 [exp]	18.9	0.9589
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10015765 [exp]	20.2	0.9589
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10026679 [exp]	21.4	0.9588

Compare expression of checked genes

Lus10017870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.