Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69120 265 / 7e-91 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) AT5G60910 263 / 4e-90 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2) AT1G26310 250 / 5e-85 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT3G30260 203 / 2e-66 MADS AGL79 AGAMOUS-like 79 (.1) AT1G24260 171 / 1e-53 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G03710 168 / 2e-53 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G15800 168 / 1e-52 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) AT3G02310 162 / 3e-50 MADS AGL4, SEP2 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) AT2G45650 160 / 1e-49 MADS AGL6 AGAMOUS-like 6 (.1) AT2G45660 152 / 6e-47 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034662 [exp] 342 / 2e-121 AT5G60910 284 / 3e-97 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10007983 [exp] 318 / 1e-111 AT5G60910 298 / 3e-102 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10021140 [exp] 317 / 3e-111 AT5G60910 291 / 1e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10026679 [exp] 266 / 2e-91 AT1G69120 338 / 1e-118 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10004637 [exp] 263 / 1e-90 AT1G69120 318 / 2e-111 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10005081 [exp] 236 / 1e-78 AT1G69120 223 / 1e-72 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10034370 [exp] 229 / 4e-77 AT1G69120 224 / 1e-73 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10034663 [exp] 177 / 8e-56 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10004638 [exp] 166 / 5e-52 AT3G02310 246 / 2e-82 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G062300 [exp] 284 / 2e-98 AT5G60910 288 / 5e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.008G098500 [exp] 266 / 2e-91 AT1G69120 336 / 9e-118 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Potri.010G154100 [exp] 260 / 5e-89 AT1G69120 324 / 7e-113 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Potri.004G115400 [exp] 255 / 7e-87 AT5G60910 230 / 7e-76 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.017G099800 [exp] 251 / 4e-85 AT5G60910 255 / 7e-86 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.008G098400 [exp] 183 / 1e-58 AT5G15800 275 / 2e-93 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Potri.014G074100 [exp] 174 / 5e-55 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.001G058400 [exp] 167 / 1e-52 AT1G24260 362 / 8e-128 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.004G115500 [exp] 166 / 5e-52 AT3G02310 357 / 4e-126 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.003G169600 [exp] 166 / 7e-52 AT1G24260 359 / 7e-127 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10017871 pacid=23148786 polypeptide=Lus10017871 locus=Lus10017871.g ID=Lus10017871.BGIv1.0 annot-version=v1.0 ATGGGAAGAGGTAGAGTGGAGCTGAAGAGGATCGAGAACAAAATCAACAGGCAGGTCACTTTCTCCAAGCGGAGGTCTGGTCTTCTCAAGAAGGCTCACG AGATCTCCGTCCTCTGCGATGCTGAAGTCGCCCTCATCGTCTTCTCCCCCAAGGGCAAGCTCTTTGATTACTCCACCGACTCCTGCATGGAGAGGATCCT GGAACGCCACGAGAGGTACTCATATGCTGACAGGAACCTTGTTCCCAATGACACTCAAACATGCGGTAGCTGGACTCTAGAGTATGCAAAACTGAAAGCC AGGATTGAAGTGTTACAGAAGAACCTGAGGCACTACAACGGGGAAGAAATTGATACCTTAAGCATTAGGGAGCTTCAAAACCTGGAGCAGCAACTTGATT CTGGACTTAAACATATTCGTTCAAGAAAGAACCAACTGATGCATGAGTCGATCTCAGAGCTTCAGAAAAAGGACAAGGCCCTGCAGGAGCAAAACAACCA ACTGGCAAAGAAGGTCGGATTCTAG
AA sequence Show only first row Show all	>Lus10017871 pacid=23148786 polypeptide=Lus10017871 locus=Lus10017871.g ID=Lus10017871.BGIv1.0 annot-version=v1.0 MGRGRVELKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSPKGKLFDYSTDSCMERILERHERYSYADRNLVPNDTQTCGSWTLEYAKLKA RIEVLQKNLRHYNGEEIDTLSIRELQNLEQQLDSGLKHIRSRKNQLMHESISELQKKDKALQEQNNQLAKKVGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10017871 [exp]	0	1
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Lus10034662 [exp]	1.0	0.9474
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10040380 [exp]	5.5	0.8994
AT4G33040			Thioredoxin superfamily protei...		Lus10024982 [exp]	6.3	0.9160
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Lus10007085 [exp]	6.9	0.9051
AT1G20823			RING/U-box superfamily protein...		Lus10025162 [exp]	7.1	0.8914
AT4G29035			Plant self-incompatibility pro...		Lus10022825 [exp]	8.5	0.9126
AT4G33040			Thioredoxin superfamily protei...		Lus10013519 [exp]	8.9	0.8953
					Lus10038154 [exp]	10.0	0.9018
AT2G25625			unknown protein		Lus10013129 [exp]	10.9	0.8953
AT1G20823			RING/U-box superfamily protein...		Lus10016040 [exp]	15.9	0.8694

Compare expression of checked genes

Lus10017871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.