Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29680 243 / 6e-79 Alkaline-phosphatase-like family protein (.1) AT4G29690 215 / 2e-68 Alkaline-phosphatase-like family protein (.1) AT4G29700 214 / 6e-68 Alkaline-phosphatase-like family protein (.1) AT4G29710 120 / 3e-35 Alkaline-phosphatase-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034660 [exp] 341 / 4e-117 AT4G29680 558 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10032681 [exp] 251 / 7e-82 AT4G29680 699 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10008562 [exp] 249 / 5e-81 AT4G29680 699 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10007981 [exp] 247 / 1e-80 AT4G29680 526 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10000041 [exp] 188 / 1e-61 AT4G29700 204 / 2e-64 Alkaline-phosphatase-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G150900 [exp] 235 / 8e-76 AT4G29680 703 / 0.0 Alkaline-phosphatase-like family protein (.1) Potri.018G066600 [exp] 235 / 1e-75 AT4G29680 678 / 0.0 Alkaline-phosphatase-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0088 [flax] [poplar] Alk_phosphatase PF01663 [flax] [poplar] Phosphodiest Type I phosphodiesterase / nucleotide pyrophosphatase
Representative CDS sequence Show only first row Show all	>Lus10017872 pacid=23148790 polypeptide=Lus10017872 locus=Lus10017872.g ID=Lus10017872.BGIv1.0 annot-version=v1.0 ATGAATCTCTATCTTGAAGAACCTGATAAACAGGGTCACCAGGTGGGACCGGATGATCCCCGAATAACGACGGCCGTGGCGAGAGTGGACGCACTACTAG GAAGACTAATCGACGGCCTCGAATCGAGACAACTCCTAGACGAAGTAACAATAATCTTGGTCGGAGACCACGGCATGGTCGGCACGTGCGACAAAAAGTA CATCTACATCGAGGACCTATCCGGTTACATCACCATCCCGGAGTCATGGATCATGTACCACACTCCGAGACGGGAGAGGCTGCATCCGCGGGAGACCGAC CGGATCCCGCCGATCATCGGGATCGTGGCGGAGGGTTACACGGTGGAGCAGCGGCGGACGGCGGGAAAGGCGATGTGTTGGGGATCGCACGGGTATGATA ATGCTCTGTTTTCGATGAGGTCGATATTTGTTGGGCGTGGGCCGAGGTTTGGGAAGGGAGTTACTGTGCCGTCGTTTGAGAATGTGGAGCTTTATAATGT GGTTACTTCTATTTTGGGGGTTGCCGGAGCTCCAAACAATGGGTCTTTGGATTTTGCTAACTCTGTTTTGTTAAGTTGA
AA sequence Show only first row Show all	>Lus10017872 pacid=23148790 polypeptide=Lus10017872 locus=Lus10017872.g ID=Lus10017872.BGIv1.0 annot-version=v1.0 MNLYLEEPDKQGHQVGPDDPRITTAVARVDALLGRLIDGLESRQLLDEVTIILVGDHGMVGTCDKKYIYIEDLSGYITIPESWIMYHTPRRERLHPRETD RIPPIIGIVAEGYTVEQRRTAGKAMCWGSHGYDNALFSMRSIFVGRGPRFGKGVTVPSFENVELYNVVTSILGVAGAPNNGSLDFANSVLLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29680			Alkaline-phosphatase-like fami...		Lus10017872 [exp]	0	1
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015753 [exp]	1.0	0.9326
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10011565 [exp]	3.2	0.9085
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10039647 [exp]	3.9	0.8801
AT5G20480		EFR	EF-TU receptor (.1)		Lus10026938 [exp]	4.0	0.8913
AT1G27040			Major facilitator superfamily ...		Lus10002793 [exp]	4.2	0.9004
					Lus10027448 [exp]	6.5	0.8472
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Lus10018027 [exp]	9.5	0.8351
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10007223 [exp]	11.4	0.8250
					Lus10005747 [exp]	11.7	0.8430
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10016444 [exp]	12.2	0.8545

Compare expression of checked genes

Lus10017872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.