Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31670 258 / 3e-87 Stress responsive alpha-beta barrel domain protein (.1) AT1G51360 202 / 8e-66 ATDABB1 dimeric A/B barrel domainS-protein 1 (.1) AT2G32500 47 / 3e-06 Stress responsive alpha-beta barrel domain protein (.1) AT3G17210 42 / 3e-05 ATHS1 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034659 [exp] 434 / 6e-157 AT2G31670 264 / 2e-89 Stress responsive alpha-beta barrel domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G125701 [exp] 300 / 2e-103 AT2G31670 257 / 6e-86 Stress responsive alpha-beta barrel domain protein (.1) Potri.001G413500 [exp] 282 / 2e-96 AT2G31670 241 / 2e-79 Stress responsive alpha-beta barrel domain protein (.1) Potri.010G037500 [exp] 45 / 2e-06 AT3G17210 170 / 2e-56 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.014G154900 [exp] 46 / 9e-06 AT2G32500 314 / 5e-108 Stress responsive alpha-beta barrel domain protein (.1) Potri.010G151000 [exp] 41 / 8e-05 AT3G17210 134 / 3e-42 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G037200 [exp] 42 / 0.0001 AT3G17210 169 / 4e-55 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0032 [flax] [poplar] Dim_A_B_barrel PF07876 [flax] [poplar] Dabb Stress responsive A/B Barrel Domain
Representative CDS sequence Show only first row Show all	>Lus10017873 pacid=23148865 polypeptide=Lus10017873 locus=Lus10017873.g ID=Lus10017873.BGIv1.0 annot-version=v1.0 ATGTCGACCGCTTCTTCCGAAACAGTGGAGCACATCGTCCTCTTCAAAGTCAAAGACAGCGTCGAACCTTCCAGAATCCAATCCATGCTGAGCTCCCTAA ACGCCCTCGTCTCTCTCGATTCGGTCCTCCACCTCTCCGCCGGTCCGATCCACCGTGTAAAATCCTCACCCATCCCATTCACGCATCTCCTCCACAGCCG CTACTCCTCCAAGGAAAACCTAAAGGCCTACGCTCTCCATCCCAGCCACGTCACCGCCGTCAAGGAGTGCGTCCTTCCGGTTTGTGAAGACGTCATGGCC GTCGATTGGATAGCCCGGGACCTCCGAGGACCGGTGACTCCGCCTCTGGGGTCTGGAATTAGGCTGACGTTTCTAAAATTGAAGGAGAATTTAGGGGAAG AGGCCAAGGGTGAGATTATCGAGGTGATTGGAGGTGTGAAGGATAAGCTGGGGGAGATGGAACAGCTAACAGTGGGGGAGAATTTCTCGCCGGAGAGAGC TAAAGGTTATTCCATTGCTTCTCTGGCTTTATTTGGTGGGGCTAGTGAGTTGGACTCCGTGGATACAAAGGGAGAGCTTGTGAACTCGGAGAAGGATAAA GTTAGGGAGCATCTGGAGAGCGTTATTGTGCTCGATTATGTGGTGCCGTCTTCACAGTCTGCGGCTAGTCTCTGA
AA sequence Show only first row Show all	>Lus10017873 pacid=23148865 polypeptide=Lus10017873 locus=Lus10017873.g ID=Lus10017873.BGIv1.0 annot-version=v1.0 MSTASSETVEHIVLFKVKDSVEPSRIQSMLSSLNALVSLDSVLHLSAGPIHRVKSSPIPFTHLLHSRYSSKENLKAYALHPSHVTAVKECVLPVCEDVMA VDWIARDLRGPVTPPLGSGIRLTFLKLKENLGEEAKGEIIEVIGGVKDKLGEMEQLTVGENFSPERAKGYSIASLALFGGASELDSVDTKGELVNSEKDK VREHLESVIVLDYVVPSSQSAASL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31670			Stress responsive alpha-beta b...		Lus10017873 [exp]	0	1
AT3G52960			Thioredoxin superfamily protei...		Lus10003373 [exp]	1.4	0.9339
AT1G66080			unknown protein		Lus10010967 [exp]	2.8	0.9222
AT3G52960			Thioredoxin superfamily protei...		Lus10002843 [exp]	4.2	0.9207
AT3G08640			Protein of unknown function (D...		Lus10035607 [exp]	6.5	0.9115
AT4G15248	CO		B-box type zinc finger family ...		Lus10015097 [exp]	7.7	0.9152
AT2G47840		AtTic20-II	translocon at the inner envelo...		Lus10026842 [exp]	8.2	0.8796
AT4G29680			Alkaline-phosphatase-like fami...		Lus10032681 [exp]	8.5	0.9120
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10012167 [exp]	9.4	0.8701
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10023418 [exp]	10.4	0.9202
AT2G03690			coenzyme Q biosynthesis Coq4 f...		Lus10026671 [exp]	11.0	0.9021

Compare expression of checked genes

Lus10017873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.