Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17400 451 / 4e-161 ER-ANT1 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) AT4G28390 355 / 2e-122 ATAAC3, AAC3 ADP/ATP carrier 3 (.1) AT5G13490 348 / 1e-119 AAC2 ADP/ATP carrier 2 (.1.2) AT3G08580 341 / 9e-117 AAC1 ADP/ATP carrier 1 (.1.2) AT5G56450 177 / 2e-53 PM-ANT Mitochondrial substrate carrier family protein (.1) AT4G01100 103 / 4e-25 ADNT1 adenine nucleotide transporter 1 (.1.2) AT1G14560 102 / 4e-25 Mitochondrial substrate carrier family protein (.1) AT3G55640 102 / 5e-25 Mitochondrial substrate carrier family protein (.1) AT2G37890 102 / 6e-25 Mitochondrial substrate carrier family protein (.1) AT4G26180 100 / 3e-24 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034658 [exp] 563 / 0 AT5G17400 491 / 5e-177 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Lus10039847 [exp] 358 / 8e-124 AT4G28390 545 / 0.0 ADP/ATP carrier 3 (.1) Lus10016418 [exp] 353 / 2e-121 AT5G13490 612 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10019702 [exp] 353 / 2e-121 AT5G13490 612 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10016417 [exp] 353 / 2e-121 AT5G13490 602 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10019701 [exp] 346 / 9e-119 AT5G13490 607 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10031843 [exp] 344 / 3e-118 AT5G13490 580 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10031276 [exp] 343 / 1e-117 AT5G13490 582 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10018612 [exp] 198 / 3e-63 AT5G13490 301 / 1e-102 ADP/ATP carrier 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G062500 [exp] 451 / 5e-161 AT5G17400 416 / 5e-147 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Potri.007G139100 [exp] 360 / 3e-124 AT4G28390 572 / 0.0 ADP/ATP carrier 3 (.1) Potri.017G012800 [exp] 354 / 7e-122 AT4G28390 575 / 0.0 ADP/ATP carrier 3 (.1) Potri.001G267800 [exp] 351 / 1e-120 AT3G08580 592 / 0.0 ADP/ATP carrier 1 (.1.2) Potri.009G062200 [exp] 351 / 1e-120 AT5G13490 625 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.001G019400 [exp] 348 / 1e-119 AT5G13490 580 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.003G204600 [exp] 346 / 8e-119 AT5G13490 582 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.006G227100 [exp] 183 / 1e-55 AT5G56450 462 / 4e-165 Mitochondrial substrate carrier family protein (.1) Potri.006G226300 [exp] 116 / 6e-30 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1) Potri.002G168100 [exp] 107 / 1e-26 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10017874 pacid=23148845 polypeptide=Lus10017874 locus=Lus10017874.g ID=Lus10017874.BGIv1.0 annot-version=v1.0 ATGGGAGGAACAGCAGCGGTGGTTTCAAAGTCGGCGGCGGCACCGATTGAGCGGGTGAAGCTATTGTTACAGAATCAAGGCGAAATGATGAAGAGAGGGC AGTTAAGAAGACCCTATGTGGGGATTGGGGATTGCTTTAGGCGGGTGTTTAGAGAAGAAGGAATCTTGTCTTTTTGGAGAGGTAATCAGGCCAATGTCAT TCGATATTTCCCAACTCAGGCTTTCAACTTTGCATTTAAAGGTTACTTCAAAAGCATATTAGGGCGGTCAAAAGAGAAAGATGGCTACGCAAAGTGGTTC ATTGGGAATGTGGCTTCAGGTAGTGCTGCTGGTGCCACTACATCATTGTTTCTCTACCATTTGGATTATGCACGTACCCGTCTGGGGACCGATTCAAGGG AATGCCGAATCAACGATCGGCGCCAATTTAAAGGATTACTTGACGTGTACAGAAAAACTTGGTCAAGTGATGGCATTGTAGGTTTGTATAGAGGATTTGG GGTTTCAATCATCGGAATTACTCTTTATCGCGGCATGTACTTCGGGATCTACGATACTGTGAAGCCGATTCTGTTGGTGGGATCTCTAGAGGGGAATTTC TTAGCAAGTTTCTTTCTAGGTTGGAGCATCACTACAGTCTCTGGGGTTTGTGCATACCCTTTCGACACAGTAAGGCGAAGAATGATGCTAACTTCTGGAC AGCCCAATAAATACCTAAATGCTGTACATGCACTGCGAGAGATTGTTCGTGTCGAAGGGTTTGCTGCTCTTTTTCGAGGAGTAACTGCAAATATGCTTCT TGGAGTTGCCGGGGCAGGAGTTCTAGCAAGTTATGATCAGCTGCAGAGATTTGCTAATAGAAGTGGTTATGTGTTGGAGCACCCAAGCCAAAAATCCTAC TGA
AA sequence Show only first row Show all	>Lus10017874 pacid=23148845 polypeptide=Lus10017874 locus=Lus10017874.g ID=Lus10017874.BGIv1.0 annot-version=v1.0 MGGTAAVVSKSAAAPIERVKLLLQNQGEMMKRGQLRRPYVGIGDCFRRVFREEGILSFWRGNQANVIRYFPTQAFNFAFKGYFKSILGRSKEKDGYAKWF IGNVASGSAAGATTSLFLYHLDYARTRLGTDSRECRINDRRQFKGLLDVYRKTWSSDGIVGLYRGFGVSIIGITLYRGMYFGIYDTVKPILLVGSLEGNF LASFFLGWSITTVSGVCAYPFDTVRRRMMLTSGQPNKYLNAVHALREIVRVEGFAALFRGVTANMLLGVAGAGVLASYDQLQRFANRSGYVLEHPSQKSY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17400		ER-ANT1	endoplasmic reticulum-adenine ...		Lus10017874 [exp]	0	1
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10033954 [exp]	2.0	0.7359
AT4G38090			Ribosomal protein S5 domain 2-...		Lus10025724 [exp]	2.8	0.7063
AT5G48545		HINT3	histidine triad nucleotide-bin...		Lus10025883 [exp]	3.7	0.7625
AT1G33810			unknown protein		Lus10005296 [exp]	5.7	0.6768
AT2G36895			unknown protein		Lus10001393 [exp]	5.7	0.7357
AT1G33810			unknown protein		Lus10005295 [exp]	14.5	0.6136
AT1G36320			unknown protein		Lus10036666 [exp]	19.2	0.6610
AT1G78620			Protein of unknown function DU...		Lus10005554 [exp]	19.8	0.6776
AT2G35200			unknown protein		Lus10036051 [exp]	21.5	0.7099
AT4G13200			unknown protein		Lus10011869 [exp]	23.9	0.7307

Compare expression of checked genes

Lus10017874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.