Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32120 81 / 9e-17 unknown protein AT4G16050 80 / 2e-16 Aminotransferase-like, plant mobile domain family protein (.1) AT1G50830 77 / 2e-15 Aminotransferase-like, plant mobile domain family protein (.1) AT1G51538 72 / 5e-14 Aminotransferase-like, plant mobile domain family protein (.1) AT1G50750 71 / 3e-13 Plant mobile domain protein family (.1) AT5G18510 69 / 1e-12 Aminotransferase-like, plant mobile domain family protein (.1) AT1G50820 55 / 3e-08 Aminotransferase-like, plant mobile domain family protein (.1) AT1G50790 54 / 1e-07 Plant mobile domain protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043051 [exp] 75 / 7e-15 AT4G16050 243 / 5e-72 Aminotransferase-like, plant mobile domain family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10017876 pacid=23148832 polypeptide=Lus10017876 locus=Lus10017876.g ID=Lus10017876.BGIv1.0 annot-version=v1.0 ATGGATACAATAGAGAAGTACTTCCCACATAGGGTCTCAATGCAGTTTGGATATGATCAGGACATTCCTGTCAATGTGGCGAGTGATTCAAATGAGAGTT GTCAGATTGAAGCTTGGAGGGATTACTCTAAGGATTTAAACGGTGTGAGATTGTACTTGCCATCCCGGCTTTTCGAGGCAGATGTTACGACCCGTGATCA GCAATGGTGGAAACCTCAAGTTGTTGAGTTTCAAAGAATTGAACTGCAGAATTTGGGTAATCAGAAGAAGCTGATGGGGAAGACAAGGGCTAAAAAAACA GAAATAATGTCACATCAGAATATAAAGAGAAACAAGGATAGTAATGATCAGTTGACTGATGTTGGAAGCTTTGCAAACAGGTCCAAGATTAAGCAGCTCG GCGACAAGTCTTCAAACAATGTTGATGATGCCGAAGATAAAATGACAATCGCAGTGTTGCTGAAAAGTGACAAGAAGATAAATGGTAATTCATCTCTCAA TGAAGATTTCCAACCAGCAGTGGATAGTATTGTTTTGGAGACTCAACCAGCTGAGAGAAGACAGAAGAAACCAAATGATGGCGATGACTATCGCTCTGGT CAGTCTTCACAAGAACAGTTTTCACCCGCACACGGTCAGATTTCATCAATAGGATCTGACTCAGCCTTGGTTGCAGAGTTGAGGGAATCAGGGATAAACA ATGCGACCTTAACAAATTCAGATGCAGCTAGCAACCCTGTGATTAAGCTAGAGCCTGTTGAAGAAGTGATGAAAGAAGCAGGAAAAGGAATCGTCGAAAA TGAGAATCAAAGTAATACCAGTGGTGCAAAGAAAATCGGAGAAATTATTGCACGTATTGCAGATCACTTGAGCTACATCGAGAAGAAACTTGGACTGCAG TAG
AA sequence Show only first row Show all	>Lus10017876 pacid=23148832 polypeptide=Lus10017876 locus=Lus10017876.g ID=Lus10017876.BGIv1.0 annot-version=v1.0 MDTIEKYFPHRVSMQFGYDQDIPVNVASDSNESCQIEAWRDYSKDLNGVRLYLPSRLFEADVTTRDQQWWKPQVVEFQRIELQNLGNQKKLMGKTRAKKT EIMSHQNIKRNKDSNDQLTDVGSFANRSKIKQLGDKSSNNVDDAEDKMTIAVLLKSDKKINGNSSLNEDFQPAVDSIVLETQPAERRQKKPNDGDDYRSG QSSQEQFSPAHGQISSIGSDSALVAELRESGINNATLTNSDAASNPVIKLEPVEEVMKEAGKGIVENENQSNTSGAKKIGEIIARIADHLSYIEKKLGLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32120			unknown protein		Lus10017876 [exp]	0	1
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10023783 [exp]	5.8	0.7921
					Lus10033476 [exp]	8.6	0.7956
AT5G47810		PFK2	phosphofructokinase 2 (.1)		Lus10039993 [exp]	13.1	0.7619
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10027030 [exp]	16.4	0.7504
AT2G35210		RPA, AGD10, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10000902 [exp]	17.9	0.7397
AT3G44670			Disease resistance protein (TI...		Lus10015465 [exp]	18.1	0.7427
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10022739 [exp]	25.8	0.7474
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10005245 [exp]	26.5	0.7186
AT4G28320		MAN5, AtMAN5	endo-beta-mannase 5, Glycosyl ...		Lus10039719 [exp]	28.8	0.7627
AT5G10250		DOT3	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10026046 [exp]	39.6	0.7405

Compare expression of checked genes

Lus10017876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.