Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18590 289 / 4e-96 SOT17, ATSOT17, ATST5C ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) AT1G74100 283 / 5e-94 SOT16, ATSOT16, CORI-7, ATST5A CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) AT1G13420 272 / 1e-89 SST1, ATST4B ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) AT5G43690 263 / 2e-86 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45080 256 / 1e-83 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45070 256 / 2e-83 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G74090 256 / 4e-83 SOT18, ATSOT18, ATST5B ARABIDOPSIS SULFOTRANSFERASE 5B, desulfo-glucosinolate sulfotransferase 18 (.1) AT2G14920 253 / 2e-82 ATST4A ARABIDOPSIS THALIANA SULFOTRANSFERASE 4A, sulfotransferase 4A (.1) AT2G03770 242 / 3e-78 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03760 239 / 1e-76 AtSOT12, AtSOT1, ATST1, RAR047, ST ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008673 [exp] 253 / 3e-82 AT5G07010 429 / 3e-151 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Lus10026147 [exp] 250 / 9e-81 AT5G07010 425 / 2e-149 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Lus10041611 [exp] 216 / 2e-67 AT3G45070 239 / 9e-77 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003070 [exp] 211 / 1e-65 AT3G45070 219 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033720 [exp] 208 / 2e-64 AT1G74100 229 / 6e-73 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10034656 [exp] 195 / 2e-61 AT1G74090 77 / 4e-17 ARABIDOPSIS SULFOTRANSFERASE 5B, desulfo-glucosinolate sulfotransferase 18 (.1) Lus10033718 [exp] 199 / 4e-61 AT1G74100 209 / 3e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10018047 [exp] 198 / 1e-60 AT1G74100 208 / 7e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10033721 [exp] 203 / 1e-59 AT1G18590 223 / 6e-67 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G049100 [exp] 313 / 9e-106 AT1G18590 266 / 3e-87 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G048200 [exp] 311 / 8e-105 AT1G18590 273 / 7e-90 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G048400 [exp] 306 / 4e-103 AT1G18590 248 / 2e-80 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G048300 [exp] 303 / 7e-102 AT1G18590 244 / 1e-78 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G048712 [exp] 301 / 4e-101 AT1G18590 265 / 1e-86 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.012G032700 [exp] 296 / 3e-99 AT1G74100 295 / 4e-99 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Potri.011G048100 [exp] 295 / 2e-98 AT1G74100 251 / 1e-81 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Potri.003G193250 [exp] 273 / 5e-90 AT5G07010 395 / 9e-138 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193400 [exp] 271 / 2e-89 AT5G07010 393 / 6e-137 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193300 [exp] 269 / 2e-88 AT5G07010 378 / 4e-131 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00685 [flax] [poplar] Sulfotransfer_1 Sulfotransferase domain
Representative CDS sequence Show only first row Show all	>Lus10017878 pacid=23148814 polypeptide=Lus10017878 locus=Lus10017878.g ID=Lus10017878.BGIv1.0 annot-version=v1.0 ATGCTCAAGGCAGAGGAAGACAACCCTGTAGCCACCGCCACCACTTCTGAGGACAACTCAATGAACAAACTGATCTCAACACTGCCCACAGCACCAGATG GCAACTCCAACACCAACCTGTACCAGTACCAAGGCTTCTGGTACCACTCCTATTACCTACAACTCTTAATCTCAGCTCAAACCAACTTCACCCCAAAACC CAACTCCACCATCCTCTGCAGCTACCCTAAAACCGGCACCACTTGGCTAAAGGCTCTCTCTTTCGCCATTTCCAACAGAACCCACCACAACCAAAACCCT AACTCTCAATCTCCTCTTCTCACAGTCCTCCCCCACGACTGCGTTCCCTTCATCGAGCTCCATCATTACAACAACAAACAAATTACCGATGATGATGATT TCCCATCTGAGCTTGTTGCAACTCACATCCCTTACACTTCCTTGCCACCAACTGCTTCCTCCTGTAAGATTGTGTACATCTGCAGGGACCCAAAGGACGT GTTCGTTTCGATGTGGCATTTCAGGAGGAAGCAGAAGGAAACCACAGGGGTGGTTGACGCCATGGGGATTGAAGATGGGTTTGATCAGTTCTGCCAAGGG GTTTCAATTGCTGGGCCGTACTGGGATCATGTTTTGGGGTATTGGAAGGCCAGCTTGGAGTTTCCAGAGAGGGTTCTGTTTCTGAGGTATGAGGTGTTGA AGAGGGAGACGGTGAAGTGGGTGAAGAAACTTGCTGAGTTTTTGGGATGTGGGTTTAGTTTTGAAGAGGAAGATGGCGGGATTGTGGAGAAGATTGTTGA GTTGTGTGGGATTGAGAATTTGAAGGGTTTGGAAGTGAGTAAAGAGGGGTGGTATCTTGTGGATACTCCGTTTGCTGTGCCTAACAGTTCGTTTTATAGG AAGGGACAAGTTGGGGATTGGAGGAATTGTATTAGCGATGAGATGGCAGCTCGTTTGGATCGGATTGTGGAAGATAAACTTCGTGGGTATGGATTCAGAT TGTGGTATTCTGCACGTTCGATGCCAGAAACAACTTAA
AA sequence Show only first row Show all	>Lus10017878 pacid=23148814 polypeptide=Lus10017878 locus=Lus10017878.g ID=Lus10017878.BGIv1.0 annot-version=v1.0 MLKAEEDNPVATATTSEDNSMNKLISTLPTAPDGNSNTNLYQYQGFWYHSYYLQLLISAQTNFTPKPNSTILCSYPKTGTTWLKALSFAISNRTHHNQNP NSQSPLLTVLPHDCVPFIELHHYNNKQITDDDDFPSELVATHIPYTSLPPTASSCKIVYICRDPKDVFVSMWHFRRKQKETTGVVDAMGIEDGFDQFCQG VSIAGPYWDHVLGYWKASLEFPERVLFLRYEVLKRETVKWVKKLAEFLGCGFSFEEEDGGIVEKIVELCGIENLKGLEVSKEGWYLVDTPFAVPNSSFYR KGQVGDWRNCISDEMAARLDRIVEDKLRGYGFRLWYSARSMPETT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18590		SOT17, ATSOT17,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Lus10017878 [exp]	0	1
AT3G07720			Galactose oxidase/kelch repeat...		Lus10012345 [exp]	1.4	0.8991
					Lus10011339 [exp]	3.5	0.8960
					Lus10020006 [exp]	4.4	0.9012
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10007804 [exp]	6.7	0.8888
					Lus10003135 [exp]	7.4	0.8715
AT4G20880			ethylene-responsive nuclear pr...		Lus10023347 [exp]	8.2	0.8935
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10010880 [exp]	9.6	0.8578
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10023213 [exp]	10.2	0.8779
AT5G63380			AMP-dependent synthetase and l...		Lus10032755 [exp]	10.3	0.8148
					Lus10029856 [exp]	15.5	0.8246

Compare expression of checked genes

Lus10017878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.