Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08100 152 / 9e-46 ASPGA1 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) AT3G16150 108 / 7e-29 ASPGB1 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) AT4G00590 42 / 5e-05 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034668 [exp] 174 / 2e-54 AT5G08100 489 / 6e-176 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10034655 [exp] 172 / 9e-54 AT5G08100 507 / 0.0 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10024795 [exp] 111 / 5e-30 AT3G16150 536 / 0.0 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Lus10040935 [exp] 45 / 9e-06 AT4G00590 484 / 8e-171 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10009826 [exp] 43 / 4e-05 AT4G00590 446 / 2e-156 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G063400 [exp] 159 / 1e-48 AT5G08100 485 / 2e-174 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Potri.014G022900 [exp] 112 / 1e-30 AT3G16150 556 / 0.0 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Potri.002G122900 [exp] 110 / 9e-30 AT3G16150 540 / 0.0 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Potri.014G080600 [exp] 45 / 9e-06 AT4G00590 486 / 1e-171 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF01112 [flax] [poplar] Asparaginase_2 Asparaginase
Representative CDS sequence Show only first row Show all	>Lus10017879 pacid=23148861 polypeptide=Lus10017879 locus=Lus10017879.g ID=Lus10017879.BGIv1.0 annot-version=v1.0 ATGGGTTGGGCAATCGCTCTCCACGGCGGCGCCGGCGACATACCACGCTCTCTTCTGCCCGACCGCTGTCTCCCCCGCGAAGCCGCTCCCTCCAGCTCGG TGTCTCCGCTCTTCAGTCCAACTCCCACCCTCTTGACGTCGTCGAGCTCGTCTTGGTTGTTCTCTCGTTTTGTCCTTAACTTTGGTGGTCTATGTACTGT TGGTGAATTGGAGAACCACCCACAGTTTAATGCTGGTAAGGGATCTGTGTTAACCGCTGTTGGGACAGTGGAGATGGAAGCCATCATGGACGGCAAAACA AAGAAATGTGGAGCAGTTTCTGGACTTACCACTGTTGTCAACGCTATCTCACTTGCACGCCTCGTCATGGAAAAGACTCCTCACATCTATCCAGGATTCG AAGGAGCTGAAGCTTTTGCAAGGGAACAAGTCAGTTTATTCTTAGCTCCCTTTCTTCTGTGGAGCTCTGAAGTCTGA
AA sequence Show only first row Show all	>Lus10017879 pacid=23148861 polypeptide=Lus10017879 locus=Lus10017879.g ID=Lus10017879.BGIv1.0 annot-version=v1.0 MGWAIALHGGAGDIPRSLLPDRCLPREAAPSSSVSPLFSPTPTLLTSSSSSWLFSRFVLNFGGLCTVGELENHPQFNAGKGSVLTAVGTVEMEAIMDGKT KKCGAVSGLTTVVNAISLARLVMEKTPHIYPGFEGAEAFAREQVSLFLAPFLLWSSEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10017879 [exp]	0	1
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10024685 [exp]	1.7	0.9612
AT1G16310			Cation efflux family protein (...		Lus10001768 [exp]	2.2	0.9680
AT3G61660			unknown protein		Lus10033949 [exp]	2.2	0.9542
AT1G14180			RING/U-box superfamily protein...		Lus10036764 [exp]	3.7	0.9615
AT3G58360			TRAF-like family protein (.1)		Lus10012948 [exp]	4.2	0.9453
					Lus10010608 [exp]	7.3	0.9341
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030590 [exp]	8.7	0.9376
AT1G70840		MLP31	MLP-like protein 31 (.1)		Lus10020497 [exp]	9.4	0.9573
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10001458 [exp]	9.6	0.9392
AT1G09440			Protein kinase superfamily pro...		Lus10030863 [exp]	10.2	0.9412

Compare expression of checked genes

Lus10017879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.