Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60880 47 / 3e-06 BASL breaking of asymmetry in the stomatal lineage (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034654 [exp] 309 / 4e-106 AT5G60880 90 / 4e-21 breaking of asymmetry in the stomatal lineage (.1.2) Lus10013504 [exp] 48 / 1e-06 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G048600 [exp] 100 / 4e-25 AT5G60880 87 / 4e-20 breaking of asymmetry in the stomatal lineage (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017880 pacid=23148802 polypeptide=Lus10017880 locus=Lus10017880.g ID=Lus10017880.BGIv1.0 annot-version=v1.0 ATGAGCACGGCATGGACAACAAGTCCAAGCTCCAAGATCATCAGATGGCGTGTCCGCGACTGGGTTTCTTGCTTCTTGGCTTCCCGCATTCCTCTAGACG ATCATGACCCAGAAAACAGAAACATGGTACGGGATTTCAGCGGTGGTGGCGGAAGTCAATGCCGGTATCATTATCAGAACAAACGGAGAAATAGACGGAG GAAAGATCGACGGGTTGGGGAAGATATCATTAGGGACAAAAATCAAATATCGGTCGCAGATCAAGACTTAGAAACAGAGTCGGTTATTAGTAACGACATG CCGTCGAAAGACCTGAGGAAGCCGACCGAAACGGCGTCGGTAGAGGACTACATAGTGTTCTGCTTTGGTGAAAACGGTGCGTTTGAAGTTGTTAAGGACT GCAGAAGAAACAGGAGTCGTCATAGAAGAAGTACTACTAATGATGATGATGATCCTACAAAATCTTCGGCTGCAAAACACACTGCCAGCAGAAAGTTGAA TTATGGGCATGAAAGCTGGGAGAAACGGTCATCGTCGACAGATGGTGATTCGGATTTAGATCCAGAGGTCGTCATTCATCTCCATGAGGGAGAGGAGAAA AATGATAATGGTACAAGCCATAAAATTCGGAATCCCTTGGAAGAGATGGATGGAAACAAGTCAGATGACAGCAGCTCAGATTCATTTTCATTCCCTGTAT TGCAGTGGGAAGAGATGGTAGGGAGTCCAATACAGATGCCAAAACCAGAAGACTTTCACCTCAGGAAGCAAAGATTGAACTGTGCTCGTTTCCAGTGCCG TAGATTTTGA
AA sequence Show only first row Show all	>Lus10017880 pacid=23148802 polypeptide=Lus10017880 locus=Lus10017880.g ID=Lus10017880.BGIv1.0 annot-version=v1.0 MSTAWTTSPSSKIIRWRVRDWVSCFLASRIPLDDHDPENRNMVRDFSGGGGSQCRYHYQNKRRNRRRKDRRVGEDIIRDKNQISVADQDLETESVISNDM PSKDLRKPTETASVEDYIVFCFGENGAFEVVKDCRRNRSRHRRSTTNDDDDPTKSSAAKHTASRKLNYGHESWEKRSSSTDGDSDLDPEVVIHLHEGEEK NDNGTSHKIRNPLEEMDGNKSDDSSSDSFSFPVLQWEEMVGSPIQMPKPEDFHLRKQRLNCARFQCRRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60880		BASL	breaking of asymmetry in the s...		Lus10017880 [exp]	0	1
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10037110 [exp]	3.9	0.7138
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10022934 [exp]	11.1	0.5759
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10021007 [exp]	13.6	0.5559
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10005516 [exp]	23.4	0.5190
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017176 [exp]	28.3	0.5093
AT4G04980			unknown protein		Lus10033704 [exp]	29.2	0.5372
AT4G18060			SH3 domain-containing protein ...		Lus10025372 [exp]	29.4	0.5608
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Lus10010119 [exp]	33.3	0.5086
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017177 [exp]	34.8	0.5086
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10019238 [exp]	35.2	0.5313

Compare expression of checked genes

Lus10017880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.