Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08120 196 / 8e-60 MPB2C, ATMBP2C, MBP2C movement protein binding protein 2C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034653 [exp] 572 / 0 AT5G08120 276 / 5e-90 movement protein binding protein 2C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G107000 [exp] 281 / 8e-93 AT5G08120 269 / 1e-88 movement protein binding protein 2C (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017881 pacid=23148851 polypeptide=Lus10017881 locus=Lus10017881.g ID=Lus10017881.BGIv1.0 annot-version=v1.0 ATGTTCGACCCCCAGAACTTGTTGGACTTGCAGGAGGAAGATTCAAGTTTCATAGACTCTTCCGTAACTCACCCACGGTTGACCAATTCTCAGTTCGCCG CCCACTTAGCCGCCGCCTCTACTTCCAACCGTGGCGCCAACAATGGCAGCCTCGATCACGTCCTCTTCCAAGATCTGGTCGAGATCGTCCCTCTTGTCCA GTCCCTCATCGATAGGAAAGCTAACAGTTCTTTTACACGGAGGGGTTCAATTGTGTACACCAAGACGCCTTCCAGAGAATCGTTGTCTAGAAAGGCGAAC GATCAAAAGAAGAGGAACGGAAGTCAGCCTATTCCTGCGAAGAAGAAAAGAGATAATGTAGACAAGGATCGATGTAAAGATTCTGGAGATGTTCAAGATG TCGATAACTTTACGGTGTTCACCTCAAGGGCTTTCACAGCTGACAATAGTTCGGATGAGGTGATTGCATTAAGGGAACAGGTGAAAGATTTGGAGAAAAA GTTGTTGGAGAAAGATGAGATCTTGAAAGAATTGGAGATTTCACTAAACCAGAATAATGGAATCCAGGCTGAATTAGATGCAATGAAACAGCAGGTTGCT GAAAAGGATTCCTTAATAAGGTCCAATCAACTACAGCTCTCTGATATTAAGATAAAACTGGCGGACAAGCAGGCTGCACTTGAGAGGACTCAATGGGAAG CCATGACATCAAAGAAAAAGGCTGAGAAGATTAAAGAAGAGCTGGATGCTACTCAAGGAAACATCTCATCTTTGATGATGTTGTTTGAAGGCTTGACAAA CAGTGATACTACACCACTTAGTGAAGATTATGATATCAAACCAACCGATTTAGACTACAATCCTGATATTGATGATATGGATGAGGCAGATATGCTTGAA ATGGAGGAAGCACGGCTAGCTTACATTGCAGCTGTTGCGGCAGCGAAAGAGAAGCGAGATGAGGAATCAATTATTGCGGCAGCCCTTGCGAGACAACATC TTCAGTTTCTACTTTGCAAACCTAGCGGTAAAAACCACCTGAAAAAACTCGCTGATGTTGTGAGTTCTGATGCTTCGAATGCAGTGATATATGTGCACTA G
AA sequence Show only first row Show all	>Lus10017881 pacid=23148851 polypeptide=Lus10017881 locus=Lus10017881.g ID=Lus10017881.BGIv1.0 annot-version=v1.0 MFDPQNLLDLQEEDSSFIDSSVTHPRLTNSQFAAHLAAASTSNRGANNGSLDHVLFQDLVEIVPLVQSLIDRKANSSFTRRGSIVYTKTPSRESLSRKAN DQKKRNGSQPIPAKKKRDNVDKDRCKDSGDVQDVDNFTVFTSRAFTADNSSDEVIALREQVKDLEKKLLEKDEILKELEISLNQNNGIQAELDAMKQQVA EKDSLIRSNQLQLSDIKIKLADKQAALERTQWEAMTSKKKAEKIKEELDATQGNISSLMMLFEGLTNSDTTPLSEDYDIKPTDLDYNPDIDDMDEADMLE MEEARLAYIAAVAAAKEKRDEESIIAAALARQHLQFLLCKPSGKNHLKKLADVVSSDASNAVIYVH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08120		MPB2C, ATMBP2C,...	movement protein binding prote...		Lus10017881 [exp]	0	1
AT5G54930			AT hook motif-containing prote...		Lus10016478 [exp]	3.2	0.8445
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Lus10043200 [exp]	3.7	0.8500
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Lus10034689 [exp]	3.7	0.8600
AT5G56130		THO3, AtTEX1	Transducin/WD40 repeat-like su...		Lus10008356 [exp]	6.3	0.8206
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10032871 [exp]	7.9	0.8200
AT3G14750			unknown protein		Lus10038143 [exp]	8.1	0.8474
AT4G21100		DDB1B	damaged DNA binding protein 1B...		Lus10020922 [exp]	8.5	0.8452
AT1G69060			Chaperone DnaJ-domain superfam...		Lus10036825 [exp]	9.8	0.8344
AT1G61470			Polynucleotidyl transferase, r...		Lus10001651 [exp]	14.0	0.7788
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10020889 [exp]	15.5	0.8153

Compare expression of checked genes

Lus10017881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.