Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60850 163 / 1e-48 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) AT5G60200 115 / 5e-31 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT1G51700 111 / 6e-30 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT1G07640 113 / 9e-30 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT3G45610 112 / 9e-30 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1) AT5G65590 113 / 2e-29 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1) AT3G55370 112 / 6e-29 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT2G28810 112 / 6e-29 DOF AtDof2. 2 Dof-type zinc finger DNA-binding family protein (.1.2) AT2G28510 111 / 6e-29 DOF AtDof2,1 Dof-type zinc finger DNA-binding family protein (.1) AT4G24060 112 / 8e-29 DOF AtDof4,6 Dof-type zinc finger DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034652 [exp] 429 / 1e-153 AT5G60850 162 / 4e-48 OBF binding protein 4 (.1) Lus10007976 [exp] 174 / 2e-53 AT5G60850 165 / 1e-49 OBF binding protein 4 (.1) Lus10025707 [exp] 115 / 8e-30 AT5G65590 192 / 7e-59 Dof-type zinc finger DNA-binding family protein (.1) Lus10014001 [exp] 111 / 6e-29 AT5G60200 128 / 1e-35 TARGET OF MONOPTEROS 6 (.1) Lus10016566 [exp] 112 / 8e-29 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10015425 [exp] 110 / 9e-29 AT5G60200 129 / 8e-36 TARGET OF MONOPTEROS 6 (.1) Lus10040305 [exp] 112 / 1e-28 AT3G55370 147 / 1e-40 OBF-binding protein 3 (.1.2.3) Lus10014002 [exp] 108 / 1e-28 AT5G60200 124 / 7e-35 TARGET OF MONOPTEROS 6 (.1) Lus10036172 [exp] 108 / 3e-28 AT3G55370 109 / 3e-28 OBF-binding protein 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G048300 [exp] 181 / 2e-55 AT5G60850 152 / 1e-43 OBF binding protein 4 (.1) Potri.012G063800 [exp] 164 / 6e-49 AT5G60850 137 / 9e-38 OBF binding protein 4 (.1) Potri.011G055600 [exp] 116 / 3e-30 AT1G28310 140 / 1e-38 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.011G054300 [exp] 114 / 6e-30 AT5G60850 119 / 3e-31 OBF binding protein 4 (.1) Potri.012G081300 [exp] 114 / 9e-30 AT5G62940 194 / 3e-59 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Potri.004G046100 [exp] 114 / 1e-29 AT5G60850 120 / 2e-31 OBF binding protein 4 (.1) Potri.005G134200 [exp] 114 / 1e-29 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.004G046600 [exp] 114 / 2e-29 AT1G28310 135 / 6e-37 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.005G149100 [exp] 113 / 3e-29 AT5G65590 197 / 1e-60 Dof-type zinc finger DNA-binding family protein (.1) Potri.007G038100 [exp] 112 / 3e-29 AT5G60200 122 / 5e-33 TARGET OF MONOPTEROS 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10017882 pacid=23148820 polypeptide=Lus10017882 locus=Lus10017882.g ID=Lus10017882.BGIv1.0 annot-version=v1.0 ATGCAAGACATCCACTCAATTGGCGGAGGAGCAAGGTTTTTCGCCGGCGACCGGAGGTTGAGGCCGCACAACCAGCCAGTGAATTGCCCTCGGTGCGACT CCGTCAACACCAAATTCTGCTACTACAACAACTACAACCTCTCCCAGCCCCGTCACTTCTGCAAGAGCTGCCGCCGTTACTGGACCAGCGGCGGCGTTCT CCGCAACGTCCCCGTCGGCGGCGGCTGCCGCAAACCCAAACGGTCTAAGCCCAAACAGAATCCAGCCTCTAGTTCCGCCGCCGATTCCACAACTCAGCCG CCGGAAGATAAGCTGAATTTTGCAGATTCTCATTCCAGCAGCGAGAGCTCCAGCCTGACAGCGCCGACAACGGAAGTTATTTCTGTAGGAAATTACTCAA TTTCTGATCAGAACAACAAGTTGATTGGCAATTCAAGTTTGAATCCGAGCTTCGAGACGGCGTCGTTTCCTGTGCAGGGAGGCGAGTGCGGTATGTTTCA GTTTCAGTTACGAGAGATGGGGAGCATAACGAGCTTACGTAGTTGGACCACGAAGGAAACGCCGTCGTTTGACACTCCGTTGAGCCAGGGGCAGAGCAAG GATGAGGAAGAGTGGAGGATGCAGGGGATGATTGATCCGACGGATCAGGATGAGTACTTGTCGGTGTTACAGAGTGGCCGATCAGGTGGATTTGGACCGT TGGATTGGAATGAGGCGGGTGGTGGTGGAGGATATTTCGATCTTCCTCTGTCGGCTGTGGATCATGCGTACTGGAGTCAGAGTCAGTGGAATTACGACTG A
AA sequence Show only first row Show all	>Lus10017882 pacid=23148820 polypeptide=Lus10017882 locus=Lus10017882.g ID=Lus10017882.BGIv1.0 annot-version=v1.0 MQDIHSIGGGARFFAGDRRLRPHNQPVNCPRCDSVNTKFCYYNNYNLSQPRHFCKSCRRYWTSGGVLRNVPVGGGCRKPKRSKPKQNPASSSAADSTTQP PEDKLNFADSHSSSESSSLTAPTTEVISVGNYSISDQNNKLIGNSSLNPSFETASFPVQGGECGMFQFQLREMGSITSLRSWTTKETPSFDTPLSQGQSK DEEEWRMQGMIDPTDQDEYLSVLQSGRSGGFGPLDWNEAGGGGGYFDLPLSAVDHAYWSQSQWNYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10017882 [exp]	0	1
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Lus10036862 [exp]	1.4	0.9019
AT1G49230			RING/U-box superfamily protein...		Lus10006785 [exp]	2.4	0.8972
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10014493 [exp]	5.5	0.8722
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10036067 [exp]	6.2	0.8765
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10010605 [exp]	9.2	0.8340
AT2G23110			Late embryogenesis abundant pr...		Lus10042745 [exp]	11.0	0.8733
AT3G52720		CAH1, ATACA1, A...	A. THALIANA ALPHA CARBONIC ANH...		Lus10017033 [exp]	13.0	0.7858
AT3G48360		ATBT2, BT2	BTB and TAZ domain protein 2 (...		Lus10018087 [exp]	13.5	0.8378
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Lus10023644 [exp]	14.8	0.8204
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10041752 [exp]	16.4	0.8536

Compare expression of checked genes

Lus10017882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.