Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21360 229 / 3e-73 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035053 [exp] 622 / 0 AT3G21360 246 / 4e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10038283 [exp] 222 / 2e-70 AT3G21360 494 / 1e-177 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10025818 [exp] 221 / 7e-70 AT3G21360 496 / 6e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10025819 [exp] 216 / 4e-68 AT3G21360 428 / 2e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006838 [exp] 200 / 6e-62 AT3G21360 397 / 5e-139 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006839 [exp] 179 / 8e-54 AT3G21360 435 / 3e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006835 [exp] 179 / 1e-53 AT3G21360 375 / 4e-130 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037585 [exp] 178 / 2e-53 AT3G21360 454 / 2e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10038282 [exp] 167 / 3e-50 AT3G21360 367 / 2e-128 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G131300 [exp] 486 / 2e-174 AT3G21360 241 / 3e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G131200 [exp] 471 / 2e-168 AT3G21360 250 / 2e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G190100 [exp] 227 / 1e-72 AT3G21360 501 / 5e-180 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02668 [flax] [poplar] TauD Taurine catabolism dioxygenase TauD, TfdA family
Representative CDS sequence Show only first row Show all	>Lus10017883 pacid=23148826 polypeptide=Lus10017883 locus=Lus10017883.g ID=Lus10017883.BGIv1.0 annot-version=v1.0 ATGGCGAGCACCAAGTACTTCAAGATTGGGAGCTGCGAAGGGCAGAAGGAGGTTGATGGCGAAACGATGCCGTTGGTGCTCGAGCCGGCCGACCAAGACA ACAAGGACATCGGGTCCCTCCTGGAGGCTCTGAGCAACAACAAGGAATGGTTCGACCAGCTGATCACGAAAAACAGCGCCGTTTTGCTGCGCGGGTTTGA CGTCCAGAGCGCTGTCAACTTCAACGACATCGTTGAGGCTTGCGACTGGGAGGACATCAGGTACGTGGGGCCCGCCCCTCGTACCCACATCCACAAGCGG GTATGGACCGCCAACGAGGGCCCGCTCTCCGAGTTCATCTACTACCACCACGAGATGGTCCTGATAAAGGAGTTTCCAAAGAAGGTGATATTGTACTGCG AGATTCCGCCGACGGAAGGTGGGGAGACGCCGTTTGTGCCGAGCTTCAAAGTGACGGAGAAGATGATGAAGGAGTTTCCGGAAGAAGTGGAGGAGATAGA GAAGAAAGGACTGATGTACACATTCTCAGCTCCGACAAGGAACACAACTACTTCCATGAGAGGCAGAGGTTGGGAGGATGCTTTCCTCACTTCCGACAAA CAGGAGGCCGAGATCAGGGCAAAGGCTCTAGGAATGGAGATCGAGTGGCTCCCAAACGGGGGAGCCAAGACGATATTGAGACCTCGGGCACTGACTAGGG TGTTCGAAGGGAGGAAAGGGAGAAGGATGTGGTTCAACACTGTGGTGGGAATGCACGGCAAGGAGCAGAGTTCTGCAACAATGGCGGACGGGACAGAGAT ACCGGATAAGTTTGTGAAAAGGTGTGGGGAGATACTTGAAGAAGAGAGCATCCAGTTCAAGTGGCAGAAGGGTGACGTGGCCTTCTTCGACAACTGGGCT CTGTTCCATGGAAGAAGGCCTTCTTCTGCTCCAAGGAAAGTTCTTGTTGCCACCTGCAAGTGA
AA sequence Show only first row Show all	>Lus10017883 pacid=23148826 polypeptide=Lus10017883 locus=Lus10017883.g ID=Lus10017883.BGIv1.0 annot-version=v1.0 MASTKYFKIGSCEGQKEVDGETMPLVLEPADQDNKDIGSLLEALSNNKEWFDQLITKNSAVLLRGFDVQSAVNFNDIVEACDWEDIRYVGPAPRTHIHKR VWTANEGPLSEFIYYHHEMVLIKEFPKKVILYCEIPPTEGGETPFVPSFKVTEKMMKEFPEEVEEIEKKGLMYTFSAPTRNTTTSMRGRGWEDAFLTSDK QEAEIRAKALGMEIEWLPNGGAKTILRPRALTRVFEGRKGRRMWFNTVVGMHGKEQSSATMADGTEIPDKFVKRCGEILEEESIQFKWQKGDVAFFDNWA LFHGRRPSSAPRKVLVATCK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10017883 [exp]	0	1
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10035053 [exp]	2.0	0.8186
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10027146 [exp]	10.0	0.7168
AT3G45970		ATHEXPBETA2.1, ...	EXPANSIN L1, expansin-like A1 ...		Lus10022639 [exp]	10.1	0.7318
AT3G45970		ATHEXPBETA2.1, ...	EXPANSIN L1, expansin-like A1 ...		Lus10003336 [exp]	11.2	0.7295
AT1G70140		ATFH8	formin 8 (.1)		Lus10042154 [exp]	20.8	0.7015
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10013675 [exp]	25.7	0.6844
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10016323 [exp]	30.3	0.6845
AT1G33720		CYP76C6	"cytochrome P450, family 76, s...		Lus10006323 [exp]	32.2	0.6629
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10033737 [exp]	32.5	0.6686
AT1G26560		BGLU40	beta glucosidase 40 (.1)		Lus10037098 [exp]	34.5	0.6400

Compare expression of checked genes

Lus10017883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.