Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26110 282 / 1e-86 DCP5 decapping 5 (.1.2) AT5G45330 132 / 1e-32 DCP5-L decapping 5-like (.1) AT4G19360 89 / 3e-20 SCD6 protein-related (.1.2) AT4G19340 53 / 1e-07 SCD6 protein-related (.1) AT4G19260 53 / 2e-07 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G19330 50 / 4e-06 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035052 [exp] 853 / 0 AT5G45330 422 / 4e-140 decapping 5-like (.1) Lus10017885 [exp] 769 / 0 AT1G26110 473 / 5e-160 decapping 5 (.1.2) Lus10035051 [exp] 665 / 0 AT1G26110 297 / 1e-92 decapping 5 (.1.2) Lus10033287 [exp] 134 / 4e-33 AT1G26110 222 / 3e-65 decapping 5 (.1.2) Lus10034747 [exp] 134 / 4e-33 AT1G26110 229 / 5e-68 decapping 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G114900 [exp] 528 / 0 AT1G26110 419 / 5e-139 decapping 5 (.1.2) Potri.010G131400 [exp] 512 / 3e-175 AT1G26110 494 / 1e-168 decapping 5 (.1.2) Potri.004G104000 [exp] 375 / 2e-122 AT1G26110 207 / 7e-59 decapping 5 (.1.2) Potri.017G111500 [exp] 260 / 1e-78 AT1G26110 208 / 2e-59 decapping 5 (.1.2) Potri.004G235100 [exp] 171 / 4e-46 AT5G45330 229 / 7e-68 decapping 5-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09532 [flax] [poplar] FDF FDF domain
Representative CDS sequence Show only first row Show all	>Lus10017884 pacid=23148810 polypeptide=Lus10017884 locus=Lus10017884.g ID=Lus10017884.BGIv1.0 annot-version=v1.0 ATGGAGAATAGTGCCAATTCGACTTCGACATCCAGATCGAATTCAGCGGCGGATTCATACGTAGGAAGCTTGATAAGCTTGACTTCCAAGAGTGAGATCA GATATGAAGGCGTTCTTTACAACATCAACACTGATGAGTCTAGTATCGGATTGAGAAATGTTCGGTCCTTCGGAACTGAAGGACGGAAAAAGGATGGTCC GCAAATTCCTCCCAGTGACAAAGTGTATGAATACATACTGTTCAGAGGAACTGACATCAAGGACTTGCAGGTTAAGTCATCACCCCCTGTTCTTCAGCCC ACGCCACCTATAAACAATGATCCAGCTATTATACAGTCTCACTATCCTCGACCAGTTTCAACTTCTTCGGGCATGCCTTCTGCTGTTTCTGGATCCTTGC CTGATCCCGGGTCCCAAAATGCACAAATGGGAATGTCTGCACCAAATTACCAAAGTGGTTTGCCATTGTATCAGCCTGCAGGAGCTTTAGGAACATGGGG GCCTTCACCTCCTCCAAATGCAAATGGAACTGGGCTTGCTATGCCGATGTACTGGCAAGGATATTATGGTCCTCAAATGCACCAGCAACAATTGCTTCGT CCACCGCAAGGGTTGACAATGAATTCTTCCATGCAGCAGCAAATGCAATATCCAAACTTTAATGTCCCGTTACCTGTCGGAGCTTCAAACTTCCCGGTAT CAAATATGCCCTCTCAAAACATGCCACCGTCCATTCTTCCAGCCTCAAACTCGACACTGTCAAATCTGCCAGCCTCAAACTTGCCACCAGCTTCAAACAT GCTAACTTCTATACCCAATGTTTCACCTCCTCTACTCCCTACTAGCACTTCGGTTAACTCTGTGTCGTTGCTGACAGCCCTGCCTCCAACCCTTACAACA GAGCCCTCTTCTACCATACCTTCTGAAGCATTGCCTGGTTTGGTACCTGCCCGGGCAACCAACTCAGTTCTTCCAGTATCCAACATAAGTCCCAACTTGC CATCCCTAACACAACTACCAACTTCAATATCTGAATTGAACCACATTCCTGGCAAGCCTAACCCAATTGCTGCTCCTGCAATTCCTTATTCTAGCAGCGT TGAGCCTGAATCATCAGCTGCTGGTCCTTCAGCTCCTTTGTATAACACTCTACTGCCGGCATCATCAGCTGCTGCATCACGTACAGAATCTCCATCACCT TCACTGGTAACCCCTGGCCAGTTACTGCAGTCTGGACCTTCAGCAGTTGTTCAGTCATCCGAGCCCCTGCAAACAGCTCCTACAGACGTGAAAGTTATTC AGCCGTCTGCAACGTCTTCGTCAGAACCAGTTCTTCCCATTCCCAAGGAAGCTCAACCACCAATTCTCCCATTGCCTGTACCTTCTCGGCCAGCCTATAA GCCGAACGGAGGACCATACCATGCTCGCCATGGTCATGGCTATCATGGACGGGATAGAGGAAGAGGAGTTGGGGGTTCACGTCCTATGGCTAGATTTACG GAGGATTTTGACTTTTTGGCAATGAATGAGAAATTCAATAAGGACGAAGTATGGGGTCACCTTGGTAAGAACAAGGCAAAAGACAAAGAAGACGGCAAAG CCAGTGATGAAGATGATTTTGAAGAGGAAGATGATGTTGGCAAGCCGGTTTACAACAAGGACGACTTTTTTGATACCCTTTCCAGCCATACACTTGGCCG TGATTCACAAAATGGAAGGCCTAGATTCTCGGAGCAAATGAAGTTAGACACAGAGACTTTTGGTGATTTTCCAAGATATCGTGGCCGCGGCGGCCGTGGA GGAGGACCACGGGGACGGTCTCGTGGTTCATACTATGGAAGGGGATATGGGTATGGATATAATGGTGGGAGGGGTCGTGGTGGGAACCGTGATTCCTAG
AA sequence Show only first row Show all	>Lus10017884 pacid=23148810 polypeptide=Lus10017884 locus=Lus10017884.g ID=Lus10017884.BGIv1.0 annot-version=v1.0 MENSANSTSTSRSNSAADSYVGSLISLTSKSEIRYEGVLYNINTDESSIGLRNVRSFGTEGRKKDGPQIPPSDKVYEYILFRGTDIKDLQVKSSPPVLQP TPPINNDPAIIQSHYPRPVSTSSGMPSAVSGSLPDPGSQNAQMGMSAPNYQSGLPLYQPAGALGTWGPSPPPNANGTGLAMPMYWQGYYGPQMHQQQLLR PPQGLTMNSSMQQQMQYPNFNVPLPVGASNFPVSNMPSQNMPPSILPASNSTLSNLPASNLPPASNMLTSIPNVSPPLLPTSTSVNSVSLLTALPPTLTT EPSSTIPSEALPGLVPARATNSVLPVSNISPNLPSLTQLPTSISELNHIPGKPNPIAAPAIPYSSSVEPESSAAGPSAPLYNTLLPASSAAASRTESPSP SLVTPGQLLQSGPSAVVQSSEPLQTAPTDVKVIQPSATSSSEPVLPIPKEAQPPILPLPVPSRPAYKPNGGPYHARHGHGYHGRDRGRGVGGSRPMARFT EDFDFLAMNEKFNKDEVWGHLGKNKAKDKEDGKASDEDDFEEEDDVGKPVYNKDDFFDTLSSHTLGRDSQNGRPRFSEQMKLDTETFGDFPRYRGRGGRG GGPRGRSRGSYYGRGYGYGYNGGRGRGGNRDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10017884 [exp]	0	1
AT4G37270		ATHMA1, HMA1	ARABIDOPSIS THALIANA HEAVY MET...		Lus10011510 [exp]	1.7	0.8834
AT5G51150			Mitochondrial import inner mem...		Lus10043005 [exp]	5.8	0.7972
AT4G26450		WIP1	unknown protein		Lus10008342 [exp]	6.0	0.8404
AT3G58460		ATRBL15	RHOMBOID-like protein 15 (.1.2...		Lus10021092 [exp]	6.9	0.8218
AT4G26750		EXT-like	extensin-like, hydroxyproline-...		Lus10012781 [exp]	9.4	0.8052
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10043330 [exp]	9.5	0.8162
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10029756 [exp]	12.2	0.8065
AT4G26450		WIP1	unknown protein		Lus10027096 [exp]	16.3	0.8261
AT2G41350		AtAUG1, EMB2819	EMBRYO DEFECTIVE 2819, augmin ...		Lus10034184 [exp]	17.3	0.8019
AT4G01810			Sec23/Sec24 protein transport ...		Lus10007190 [exp]	18.8	0.8204

Compare expression of checked genes

Lus10017884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.