Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26110 267 / 1e-80 DCP5 decapping 5 (.1.2) AT5G45330 130 / 1e-31 DCP5-L decapping 5-like (.1) AT4G19360 89 / 2e-20 SCD6 protein-related (.1.2) AT4G19340 52 / 4e-07 SCD6 protein-related (.1) AT4G19260 52 / 4e-07 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G19330 48 / 2e-05 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035051 [exp] 741 / 0 AT1G26110 297 / 1e-92 decapping 5 (.1.2) Lus10017884 [exp] 731 / 0 AT1G26110 462 / 6e-156 decapping 5 (.1.2) Lus10035052 [exp] 721 / 0 AT5G45330 422 / 4e-140 decapping 5-like (.1) Lus10033287 [exp] 132 / 1e-32 AT1G26110 222 / 3e-65 decapping 5 (.1.2) Lus10034747 [exp] 131 / 5e-32 AT1G26110 229 / 5e-68 decapping 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G114900 [exp] 508 / 3e-173 AT1G26110 419 / 5e-139 decapping 5 (.1.2) Potri.010G131400 [exp] 479 / 5e-162 AT1G26110 494 / 1e-168 decapping 5 (.1.2) Potri.004G104000 [exp] 260 / 2e-78 AT1G26110 207 / 7e-59 decapping 5 (.1.2) Potri.017G111500 [exp] 246 / 3e-73 AT1G26110 208 / 2e-59 decapping 5 (.1.2) Potri.004G235100 [exp] 161 / 2e-42 AT5G45330 229 / 7e-68 decapping 5-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09532 [flax] [poplar] FDF FDF domain
Representative CDS sequence Show only first row Show all	>Lus10017885 pacid=23148839 polypeptide=Lus10017885 locus=Lus10017885.g ID=Lus10017885.BGIv1.0 annot-version=v1.0 ATGACGACGGAGAATAGTGCTAATTCGACTTCGACATCCAGATCGAATTCAGCGGCGGATTCGTACATAGGAAGCTTGATAAGCTTGACTTCCAAGAGTG AGATCAGATATGAAGGCGTTCTTTACAATATCAATACTGACGAGTCCAGTATTGGATTGAAAAACGTTCGGTCCTTTGGAACTGAAGGACGGAAAAAGGA TGGTCCACAAATCCCTCCAAGTGACAAAGTGTACGAGTACATATTGTTCCGAGGAACTGACATCAAGGACTTGCAGGTTAAATCATCAACCCCAGTTCTT CAGCCCACGCCACCTATAAACAATGATCCAGCTATTATACAGTCTCACTATCCTCGACCAGTTTCAACTTCTTCCGGCATTCCTTCTTCTGTTTCTGGAT CCTTGCCTGATCCGGCATCCCAAAATTCACAAATGGGAATGTCTGCACCAAATTATCAAAGTGGTTTGCCATTGTATCAACCTGGAGGAGCCTTAGGAAC ATGGGGGCCTTCACCTCCTCCAAATGCAAATGGAACTGGGCTTGCTATGCCGATGTACTGGCAAGGGTATTATGGTCCTCCTAACGGGCTTCCACCAATG CACCAGCAATCTTTGCCTCGTCCACCACAAGGGTTGACAATGCATTCTCCTATGCAGCAGCAAATGCAATATCCCAACTTTAATGCCCCGTTACCTATCG GAGCTTCAAACTTTCCGGTATCAAATATGCCCACTCAAAGCTTGCCACCATCAAATATGCCCACTCAAAACTTGCCACCATCAAATATGCCCACTCAAAA CTTACCACCATCAAATATGCCCGCGTCAAACTTGCCACCATCAAATCTGCCAGCGTCAAACTTGCTAACGTCCATGCCTGATGTTTCACCTCTACTCCCT ACTAGCATTTCTGTAAACTCTATGTCGCTGTCCTCAACTCTGCCTCCAACCCTTACATCAGTGCCCTCTTCTGGGGTACCTTCTGATCCATTGCCTGGTT TGGTACTTGCCCGGGCTACCAACTCAGTTCTTCCAGCATCCAACTTAAGTCCCAACTTTCCATCCCTAACACAACTACCAACTTCAATGTCTGAATTGAA TCCCATTTCTGGAATGCCTAACCAAGTTGCTCTTCCAGCGATTCCTAGCAGCGGGCAGCCCGAATCATCAGCCTCTGGTCCTTCAGTTCCTTATCATAAC GCTGTAAAGCCAGCATCACCAGCTGCTGCATCACGCACCGAGGCACCAACACCTTCACTGGTAACCCCTGGCCAGTTACTGCAATCTGTTCCTGCAGCAG TTATTGGGTCATCCGAGCCCGAGCAAGCAGCTCATAAGGACGTGAAAGTTATTCAAGCGTCTGCAACATCTTCATCAGAACCAGTTCTTCCCATTGCTAC AGAAGCTCAGCCACCAATTCTCCCGTTGCCTGTACCCTCTCGTACTAGCCATAAGCCAAATGGAGCTCCATATCACTCGCGCCATAGTCATGGCTACCGT GGACGGGATAGGGGAAGGGGAGTTGGGGGTTCACGTCCGCTGACTAAATTTACGGAGGATTTTGATTTTAATGCAATGAATGAGAAATTTAATAAGGATG AAGTATGGGGTCACCTTGGTAAGAACAAGACGAAAGACAAAGACGATGGCAAAGCCAGTGATGAAGATGATTTTGAAGAGGAAGATGATGTCGGCAAGCC GGTTTACAACAAGGACGATTTTTTTGATACCCTTTCGAGCCATACACTTGGCCGTGATCCACAAAACGGAAGGCCTAGATTCTCTGAGCAAATGAAGTTA GACACTGAGACTTTTGGTGATTTCCCAAGATTTAGAGGTCGCGGCTTCCGTGGAGGGCCAAGGGGACGATCTCGTGGTTCATACAATGGAAGGGGATATA ATGGGTATGGTTACAATGGTTTGAGGGGTCGTGGGAGGGGGATGCCGAACCGCGAATCCTAA
AA sequence Show only first row Show all	>Lus10017885 pacid=23148839 polypeptide=Lus10017885 locus=Lus10017885.g ID=Lus10017885.BGIv1.0 annot-version=v1.0 MTTENSANSTSTSRSNSAADSYIGSLISLTSKSEIRYEGVLYNINTDESSIGLKNVRSFGTEGRKKDGPQIPPSDKVYEYILFRGTDIKDLQVKSSTPVL QPTPPINNDPAIIQSHYPRPVSTSSGIPSSVSGSLPDPASQNSQMGMSAPNYQSGLPLYQPGGALGTWGPSPPPNANGTGLAMPMYWQGYYGPPNGLPPM HQQSLPRPPQGLTMHSPMQQQMQYPNFNAPLPIGASNFPVSNMPTQSLPPSNMPTQNLPPSNMPTQNLPPSNMPASNLPPSNLPASNLLTSMPDVSPLLP TSISVNSMSLSSTLPPTLTSVPSSGVPSDPLPGLVLARATNSVLPASNLSPNFPSLTQLPTSMSELNPISGMPNQVALPAIPSSGQPESSASGPSVPYHN AVKPASPAAASRTEAPTPSLVTPGQLLQSVPAAVIGSSEPEQAAHKDVKVIQASATSSSEPVLPIATEAQPPILPLPVPSRTSHKPNGAPYHSRHSHGYR GRDRGRGVGGSRPLTKFTEDFDFNAMNEKFNKDEVWGHLGKNKTKDKDDGKASDEDDFEEEDDVGKPVYNKDDFFDTLSSHTLGRDPQNGRPRFSEQMKL DTETFGDFPRFRGRGFRGGPRGRSRGSYNGRGYNGYGYNGLRGRGRGMPNRES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10017885 [exp]	0	1
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10007664 [exp]	2.2	0.8660
AT2G14520			CBS domain-containing protein ...		Lus10005259 [exp]	2.4	0.8657
AT2G29210			splicing factor PWI domain-con...		Lus10001561 [exp]	2.4	0.9050
AT5G15080			Protein kinase superfamily pro...		Lus10030796 [exp]	4.5	0.8888
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10004962 [exp]	4.6	0.8691
AT3G11640			unknown protein		Lus10016965 [exp]	5.3	0.8651
AT3G15080			Polynucleotidyl transferase, r...		Lus10000997 [exp]	5.7	0.8407
AT3G11640			unknown protein		Lus10000027 [exp]	7.0	0.8091
AT1G77360			Tetratricopeptide repeat (TPR)...		Lus10033591 [exp]	7.2	0.8074
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10013476 [exp]	8.4	0.8540

Compare expression of checked genes

Lus10017885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.