Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68750 1479 / 0 ATPPC4 phosphoenolpyruvate carboxylase 4 (.1) AT1G53310 530 / 2e-172 ATPEPC1, ATPPC1 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) AT2G42600 528 / 1e-171 ATPPC2 phosphoenolpyruvate carboxylase 2 (.1.2) AT3G14940 527 / 4e-171 ATPPC3 phosphoenolpyruvate carboxylase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035050 [exp] 1963 / 0 AT1G68750 1560 / 0.0 phosphoenolpyruvate carboxylase 4 (.1) Lus10017653 [exp] 519 / 5e-168 AT1G53310 1725 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Lus10033610 [exp] 517 / 3e-167 AT1G53310 1722 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Lus10020701 [exp] 517 / 3e-167 AT1G53310 1714 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Lus10029837 [exp] 515 / 2e-166 AT2G42600 1719 / 0.0 phosphoenolpyruvate carboxylase 2 (.1.2) Lus10000065 [exp] 124 / 3e-32 AT3G14940 364 / 9e-121 phosphoenolpyruvate carboxylase 3 (.1) Lus10017651 [exp] 99 / 1e-23 AT1G53310 273 / 8e-87 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G114200 [exp] 1564 / 0 AT1G68750 1514 / 0.0 phosphoenolpyruvate carboxylase 4 (.1) Potri.010G131800 [exp] 1545 / 0 AT1G68750 1536 / 0.0 phosphoenolpyruvate carboxylase 4 (.1) Potri.011G110700 [exp] 521 / 7e-169 AT3G14940 1766 / 0.0 phosphoenolpyruvate carboxylase 3 (.1) Potri.001G391900 [exp] 521 / 1e-168 AT3G14940 1776 / 0.0 phosphoenolpyruvate carboxylase 3 (.1) Potri.002G214100 [exp] 518 / 1e-167 AT1G53310 1699 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF00311 [flax] [poplar] PEPcase Phosphoenolpyruvate carboxylase
Representative CDS sequence Show only first row Show all	>Lus10017886 pacid=23148849 polypeptide=Lus10017886 locus=Lus10017886.g ID=Lus10017886.BGIv1.0 annot-version=v1.0 ATGACGGACACCACTGATGATATTGCCGAAGAAATGTCGTTCCAGAGCTTCGACGACGATTGCAAGCTGCTCGGTAATCTTCTCAACGATGTATTGCAGA GGGAAGTTGATAGCAAGCTCATGAAGAAACTTGAAAAAATTCGTATCGTCGCTCAGAGTGCCTGCAATATGAGGTTGGCTGAGATAGAGGACTCAGCTGA CATGCTGGAGAAACAATTGGCTGCCGAGATGTCACAATTGACATTAGAGGAGGCCTTAACTCTGGCTCGTGCAATTAGCCATTTCCTTAACTTGATGGGA ATCGCTGAGACCCACCACAGGGTCCGAAGGTTAAGAAGTGCTGCTCATTTATCTAGATCTTGTGATGATGTCTTTACTCAGCTCTTGCAGAGTGGAATTC CTCCAGATCAACTGTATCATACTGTCTGTAAGCAGGAGGTAGAAATTGTTCTAACTGCACATCCTACCCAAATCAATCGTCGGACCTTGCAGTATAAGCA CATCAGAATTTCTCATCTTTTGGACTACAATGATCGGACTGACCTTACTCATGAAGATCGAGAAATGCTGATAGAAGATCTGGTTAGAGAGATCACCTCA ATATGGCAGACAGATGAGCTCAGGCGTCATAAGCCAACACCAGTGGATGAGGCTAGGGCTGGATTGAATATTGTTGAACAATCCCTATGGAAAGCTGTAC CTCACTATCTACGCCGTGTCAGCAATGCCCTGAAAAAGCATACAGGAATGCCACTGCCGCTAACTGCCACACCAATAAAATTTGGTTCTTGGATGGGAGG TGATAGGGACGGAAATCCGAATGTGACGTCTAAGGTCACAAGAGATGTCTCCTTATTGTCTAGATGGATGGCTATCGACCTGTATATTCGGGAAGTTGAT AGTCTCAGATTTGAACTATCCATGACCCGATGCAGCGACAGGTTGTTAGAAAATTCTTCGGAAGACAGACAGGATAGTTCAGGGATCAGAAATCAGTTTA AGTTTCATAGCCAAACATCTCGGTCTGTTCCAATGCAACTACCATCTAGTGCTGACCTGCCTTCCCGAGCTGACTGTGAGAAGGATGGATCTCCTAGATA TCCCAAACTGGAACTTCCTGGTACAGATTACATGCCGAAGTGTCAGGGACATCGAGGCTCTTCAATCCCGTTACCTTCTCCGACAGGCAATCGTGGTACA CCGTCTGGAAAGCCCACAGCTTCAAATGGTTCTCAGTCTCCAGGGATGCAAAGGTCTTCCTCTTTTTCATCTGTCCAATTTGCTGCCCAGCGGAAAAAAT TTGCGGAGTCTATGATAGGAAGATCAAGCTTCCATAAGCTTCTAGAGCCAAGTCCTCAACAATCTACGATCGCTCCTTACAGGATTGTTCTTAGCAATGT AAAAGACAAGCTTATGAAGACAAGAAGAAGATTGGAACTACTTCTTGAAGATATTCCTTGTGAATATGACCCTTGGGATCACTTTGAAACTGCAGATCAA TTGTTGGAACCTCTGCTTTTATGCTATGATTCTCTGCAATCATGTGGATCGGGCCTACTGGCTGATGGTCGTTTGGCTGACTTGATACGTAGAGTTGCCA CCTTTGGCATGGTGTTGATGAAGTTAGATTTACGTCAGGAATCTGGTAGACATGCTGAAGCATTGGATGCAATCACCAAATATTTGGACATGGGGACATA TAGCGAGTGGGATGAGGACAAAAAGTTACAGTTCCTGACGAGAGAACTGAAGGGCAAGCGGCCATTAATTCCGTCTAGTATCGAGGTTCCACCTGAGGTG AAAGAAGTCTTGGATACCTTCCGTGTAGCTGCTGAGCTGGGCAGTGATTCCCTCGGAGCTTATGTCATTTCCATGGCATCAAATGCAAGTGATGTCCTAG CAGTGGAGCTTCTACAAAAAGATGCCCGCCTTACTGTCAGTGGAGAGTTAGGGAGACCATGCCCTGGTGGAACGCTCCGGGTTGCTCCATTGTTTGAAAC CGTGAAGGATCTCAGAGAGGCAGGTTCAGTCATCAGGAAACTGCTGTCCATTGATTGGTACAGAGAGCACATCATCGAGAGTCACAACGGCCATCAGGAG GTGATGGTTGGATATTCGGATTCTGGTAAAGATGCAGGCCGATTCACTGCTGCTTGGGAGCTTTACAAAGCCCAGGAGGATGTTGTGACAGCATGCAATG AGTTCGGTATCAAAGTAACTCTTTTCCATGGCCGAGGAGGCAGTGTAGGTCGTGGTGGTGGCCCTACATATCTTGCCATTCAATCCCAACCTCCAGGCTC AGTAATGGGGACTCTGAGATCAACTGAGCAAGGAGAAATGGTGCAAGCAAAGTTTGGACTTCCAAACACAGCGGTGAGGCAGCTAGAGATCTACACAACT GCAGTGTTGCTGGCAACTCTCCGGCCCCCTCTTCCACCTCGAGAACTAAAATGGCGCAGCCTAATGGAGGAGATATCAAAAGTCAGTTGCCAGAACTACA GGAGCAACGTGTACGAGAATCCAGAATTCATAACCTACTTCCAAGAAGCTACACCTCAGTCTGAGCTTGGGTTCCTCAACATTGGAAGCCGTCCCACACG AAGGAAGGCATCGACTGGGATTGGCCACCTTCGTGCCATTCCATGGGTGTTCGCATGGACACAGACCAGGTTCGTCCTGCCAGCTTGGCTTGGAGTTGGA GCCGGTTTGGAATACGCTTGCCAAAAGGGACACACTGAAGACCTGAAAGCAATGTACCAAGAGTGGCCTTTCTTCCAGTCCACGATAGACCTCATAGAAA TGATCATAGGGAAGGCAGACACGTCCATAGCGAAACACTATGATCAAGTGCTTGTTTCGGAGAGCAGGCAGAAGATCGGGGAGGACCTGAGGAAGGAGCT CTCGTCGACTGAGAAGTACGTGTTGGTTGTGAGCGGGCACGAGAAGCTCTCGGACAATAACAAGAGCTTGAGGAGGCTTATCGAGGGGAGGCTGCCGTAT CTGAATCCGATGAACATGTTGCAAGTGGAAGTTCTGAAGAGGCTGAGAAGGGACGATGATAACGTAAAGCTCAGAGATGCTTTGCTGATCACCATTAACG GAATTGCCGCTGGAATGAGGAATACCGGTTGA
AA sequence Show only first row Show all	>Lus10017886 pacid=23148849 polypeptide=Lus10017886 locus=Lus10017886.g ID=Lus10017886.BGIv1.0 annot-version=v1.0 MTDTTDDIAEEMSFQSFDDDCKLLGNLLNDVLQREVDSKLMKKLEKIRIVAQSACNMRLAEIEDSADMLEKQLAAEMSQLTLEEALTLARAISHFLNLMG IAETHHRVRRLRSAAHLSRSCDDVFTQLLQSGIPPDQLYHTVCKQEVEIVLTAHPTQINRRTLQYKHIRISHLLDYNDRTDLTHEDREMLIEDLVREITS IWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTGMPLPLTATPIKFGSWMGGDRDGNPNVTSKVTRDVSLLSRWMAIDLYIREVD SLRFELSMTRCSDRLLENSSEDRQDSSGIRNQFKFHSQTSRSVPMQLPSSADLPSRADCEKDGSPRYPKLELPGTDYMPKCQGHRGSSIPLPSPTGNRGT PSGKPTASNGSQSPGMQRSSSFSSVQFAAQRKKFAESMIGRSSFHKLLEPSPQQSTIAPYRIVLSNVKDKLMKTRRRLELLLEDIPCEYDPWDHFETADQ LLEPLLLCYDSLQSCGSGLLADGRLADLIRRVATFGMVLMKLDLRQESGRHAEALDAITKYLDMGTYSEWDEDKKLQFLTRELKGKRPLIPSSIEVPPEV KEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLTVSGELGRPCPGGTLRVAPLFETVKDLREAGSVIRKLLSIDWYREHIIESHNGHQE VMVGYSDSGKDAGRFTAAWELYKAQEDVVTACNEFGIKVTLFHGRGGSVGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPNTAVRQLEIYTT AVLLATLRPPLPPRELKWRSLMEEISKVSCQNYRSNVYENPEFITYFQEATPQSELGFLNIGSRPTRRKASTGIGHLRAIPWVFAWTQTRFVLPAWLGVG AGLEYACQKGHTEDLKAMYQEWPFFQSTIDLIEMIIGKADTSIAKHYDQVLVSESRQKIGEDLRKELSSTEKYVLVVSGHEKLSDNNKSLRRLIEGRLPY LNPMNMLQVEVLKRLRRDDDNVKLRDALLITINGIAAGMRNTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68750		ATPPC4	phosphoenolpyruvate carboxylas...		Lus10017886 [exp]	0	1
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10030989 [exp]	1.7	0.8651
AT1G68750		ATPPC4	phosphoenolpyruvate carboxylas...		Lus10035050 [exp]	2.0	0.8615
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10020244 [exp]	3.2	0.8222
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10035387 [exp]	5.2	0.8381
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10010060 [exp]	5.3	0.8308
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10035386 [exp]	7.3	0.8185
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10029125 [exp]	9.5	0.8179
AT1G71230		CSN5B, AJH2	COP9-signalosome 5B (.1)		Lus10026947 [exp]	11.5	0.8037
AT5G27230			Frigida-like protein (.1)		Lus10033828 [exp]	12.0	0.8044
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10013562 [exp]	12.6	0.8038

Compare expression of checked genes

Lus10017886 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.