Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26120 571 / 0 ICME-LIKE1 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1) AT5G15860 538 / 0 ICME, ATPCME Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) AT3G02410 529 / 0 ICME-LIKE2 Isoprenylcysteine methylesterase-like 2, alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035064 [exp] 867 / 0 AT1G26120 613 / 0.0 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10034399 [exp] 662 / 0 AT5G15860 561 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10019156 [exp] 659 / 0 AT5G15860 558 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10034083 [exp] 519 / 0 AT5G15860 569 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10003065 [exp] 502 / 2e-175 AT5G15860 554 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10002907 [exp] 45 / 9e-05 AT5G16080 204 / 3e-63 carboxyesterase 17 (.1) Lus10002019 [exp] 43 / 0.0004 AT5G16080 218 / 1e-68 carboxyesterase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G132200 [exp] 623 / 0 AT1G26120 578 / 0.0 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.017G110700 [exp] 563 / 0 AT5G15860 541 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Potri.004G104800 [exp] 559 / 0 AT5G15860 547 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Potri.009G104100 [exp] 54 / 1e-07 AT2G03550 330 / 6e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104000 [exp] 53 / 2e-07 AT2G03550 327 / 8e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104300 [exp] 47 / 2e-05 AT3G48700 329 / 1e-112 carboxyesterase 13 (.1) Potri.004G142400 [exp] 45 / 0.0001 AT2G03550 331 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466200 [exp] 42 / 0.001 AT2G45600 330 / 1e-112 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10017889 pacid=23148807 polypeptide=Lus10017889 locus=Lus10017889.g ID=Lus10017889.BGIv1.0 annot-version=v1.0 ATGCCGTCGTCCCGAATTCTCCCTGTCACCACCATCAATCACCACCATAAATCCCTCAAATTAGGGCATCATCATCATCATCATTCCCCGCCAATCTCCC ATACTTCATTGCTCATCAACGACGACCAAGGGGAGAAGCAGCAACCAGAACAACAAGGAATGGTGATGAATCTCGTCCTTGACGACCCATCCACGCGTCT CCTGATCGCCTCGTCTCCTCCGCCGCTCTTCTCCGAAAACAATAGACCTCTGCTGTCTCGGAATGCCAGCTTCTCAGGTATTTCTACTGCTAGAAGTAGT AGCAGCAGCAGTAGCGAAGGAGTTGGAGGAGGTTTCTTCAAGTTTTGTGATCAGAAGAAGAAGAATAGGCGTCGCCGTACTGCTAGCGAGACTTGTCTGC TTTCCTCAATTTCTTTGTCGGAGGTGGATGACGGAAGCCGGCATCAGCAGCAGCAGCAGGAGGAGTCGTTGAGCCGTGAAGTTGGTCATGCTGCTGCGGA GACATTTCTGCTTACTAGATTGAGCTTGCAGCTCTTGACTTATCTAGGGGTAGGTTACAGATGGGTTGTGAGATTTGTTGCTCTTGGTTTCTACTCTTTG ATGCTTCTCCCTGGTTTCATTCAAGTTGGATATTATTATTTCTTCTCTAAGAATGTCATCAGGAGTGTAGTTTATGGCGATCAACCGAGAAATAGGCTTG ATCTGTACTTGCCAAAAAATATTGATGGTCCAAAGCCAGTTGTTGCATTTATAACTGGTGGAGCCTGGATAATTGGGTACAAAGCTTGGGGTTCTCTACT AGGATGGCAGCTATCGGAAAGAGACATCATAGTAGCTTGCATAGATTACAGGAACTTCCCTCAGGGAACAATGAGTGACATGGTGCAGGATGCCTGTCAA GGCATCTCATTTGTATGCAAAAATATAAAGGAATATGGAGGTGATCCAAATAGGATTTATTTGATGGGCCAATCAGCTGGAGCACACATTGCTGGTTGTG CGCTGGTTGAACAAGCAATTAAAGAAGCTGGTGTAGGAGAGAATGTTACCTGGAGTGTTTCCCAGATAAAGGCATACTTTGGTCTATCAGGAGGGTATAA CTTGTTTAACCTAGTAGATTACTTCCATAGTCGAGGTCTGTACCGATCCATATTCTTGAGCATAATGGAAGGTGAAGAGTCGTTAAGACGGTTTTCTCCC GAAGTACTTGCAGAGGATCCAACCTTGAGAAATGCAGTTTCGCTCCTCCCTCCAATTGTTCTTTTTCATGGCACTGCAGATTATTCAATCCCCTCAGAGG CCAGCACAAGCTTTGCTGAGACGCTCAAGAGATCAGGAGTAAGGGCAGAGGCAATTACATATGAAGGCAAGACTCATACAGATTTGTTCCTTCAGGATCC AATGAGAGGTGGGAAAGATCAAATGTTTGAGGATTTAGTTTCCATAATTCATTCCGGTGATCCTGAGGCTGAAGCCAAAGACAAGGTGGCTCCTCCGAGA CGACGCCTTGTTCCTGAGTTCATGTTGCAGTTAGCTCGCAAAGTCAGCCCCTTTTAG
AA sequence Show only first row Show all	>Lus10017889 pacid=23148807 polypeptide=Lus10017889 locus=Lus10017889.g ID=Lus10017889.BGIv1.0 annot-version=v1.0 MPSSRILPVTTINHHHKSLKLGHHHHHHSPPISHTSLLINDDQGEKQQPEQQGMVMNLVLDDPSTRLLIASSPPPLFSENNRPLLSRNASFSGISTARSS SSSSSEGVGGGFFKFCDQKKKNRRRRTASETCLLSSISLSEVDDGSRHQQQQQEESLSREVGHAAAETFLLTRLSLQLLTYLGVGYRWVVRFVALGFYSL MLLPGFIQVGYYYFFSKNVIRSVVYGDQPRNRLDLYLPKNIDGPKPVVAFITGGAWIIGYKAWGSLLGWQLSERDIIVACIDYRNFPQGTMSDMVQDACQ GISFVCKNIKEYGGDPNRIYLMGQSAGAHIAGCALVEQAIKEAGVGENVTWSVSQIKAYFGLSGGYNLFNLVDYFHSRGLYRSIFLSIMEGEESLRRFSP EVLAEDPTLRNAVSLLPPIVLFHGTADYSIPSEASTSFAETLKRSGVRAEAITYEGKTHTDLFLQDPMRGGKDQMFEDLVSIIHSGDPEAEAKDKVAPPR RRLVPEFMLQLARKVSPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26120		ICME-LIKE1	Isoprenylcysteine methylestera...		Lus10017889 [exp]	0	1
AT5G19780		TUA5	tubulin alpha-5 (.1)		Lus10039169 [exp]	2.6	0.8779
AT4G28550			Ypt/Rab-GAP domain of gyp1p su...		Lus10022905 [exp]	3.9	0.8383
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10033711 [exp]	4.9	0.8408
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10023995 [exp]	6.9	0.8587
AT4G28550			Ypt/Rab-GAP domain of gyp1p su...		Lus10024920 [exp]	11.7	0.8390
AT1G45207			Remorin family protein (.2)		Lus10010227 [exp]	12.2	0.8010
AT2G16405			Transducin/WD40 repeat-like su...		Lus10028800 [exp]	15.0	0.8162
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10009247 [exp]	16.2	0.8287
AT3G16850			Pectin lyase-like superfamily ...		Lus10037714 [exp]	19.4	0.8381
AT2G47960			unknown protein		Lus10018483 [exp]	19.5	0.8126

Compare expression of checked genes

Lus10017889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.