Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47990 570 / 0 SWA1, EDA13, EDA19 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) AT3G49660 79 / 6e-16 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G29830 76 / 1e-14 VIP3 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) AT1G49040 72 / 5e-13 SCD1 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) AT5G50230 70 / 2e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT1G48630 68 / 3e-12 RACK1B_AT receptor for activated C kinase 1B (.1) AT1G18080 68 / 3e-12 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT5G13480 69 / 4e-12 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G18130 67 / 7e-12 RACK1C_AT receptor for activated C kinase 1C (.1) AT2G41500 67 / 1e-11 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015340 [exp] 999 / 0 AT2G47990 594 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Lus10035065 [exp] 813 / 0 AT2G47990 528 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Lus10008305 [exp] 521 / 0 AT2G47990 358 / 1e-121 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Lus10021059 [exp] 79 / 3e-15 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10039636 [exp] 77 / 6e-15 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021571 [exp] 75 / 2e-14 AT4G29830 543 / 0.0 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10017159 [exp] 75 / 2e-14 AT4G29830 545 / 0.0 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 75 / 2e-14 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 74 / 1e-13 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135600 [exp] 727 / 0 AT2G47990 614 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Potri.002G213500 [exp] 720 / 0 AT2G47990 587 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 78 / 1e-15 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 75 / 2e-14 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G145800 [exp] 74 / 3e-14 AT4G29830 486 / 2e-174 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G049500 [exp] 74 / 2e-13 AT1G49040 1810 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.012G052700 [exp] 69 / 1e-12 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 69 / 2e-12 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G041600 [exp] 69 / 2e-12 AT1G18080 537 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G056300 [exp] 69 / 6e-12 AT1G52360 1653 / 0.0 Coatomer, beta' subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF09384 [flax] [poplar] UTP15_C UTP15 C terminal
Representative CDS sequence Show only first row Show all	>Lus10017890 pacid=23148804 polypeptide=Lus10017890 locus=Lus10017890.g ID=Lus10017890.BGIv1.0 annot-version=v1.0 ATGGCGGATCCACAACAAACCGCCTCCATCTCCAAAACCTTCAGAGTGAAGCCAAAGCTTCAATCCAAACCTAGAAACCCATCCAAAACCCTAGAATCGA AATACTGGTCTTCTTTCAAAACAACCAAGATCGAGAACCTCCTCTCCTCAATCCCTTCAATCGAGTTTTCTCCCAGTTACCCCAAACCTAGCTCCTTCGC CGCCGCCAATCTCACATCTCTAACTTTCTTCTCCGGCCAAGACTTCTCTAAACTCTCCAACATTTCCGTCTCCCGTGACACCGTCACTTCCTGCTCGTTC CGTCGCGACCCCCTCCCTTCCTGCTCGTTCCGCTCCGACGGCGCTCTCATAGCTGCCGCCGACCTCACAGGCGAAATAAAGGTGTTCAACACCAAGACCA GGGCCCCACTCCGTCGTCTCCTCTCCCACACTCGACCCGTCCGGTTTGTGAAATATCCATCTCTGGACAAGCTGCACTTGGTCTCCGGCGGCGACGATGC CATTGTCAAGTACTGGGACGTCAGCACTGAGAGCGTGGTCTGCAACTTGCAAGGCCACAAGGATTACGTGAGGTGCGGCGATTGCTCTCCTATCGATGGG GGAAGCTTTTTGAGCGGTTCTTACGATCACACCGTCAAACTGTGGGACGTGAAGGACGGGAGCAACGGGAAGGCAGTGGTGGAAGTGAATCACGGTAAGC CGGTGGAGGACGTGATGTTCTTGCCGTCTGGGCTAATGTTTGCTACCGCAGGAGGCAACAGCGTAAAGATATGGGACCTCACAGGCGGAGGGAGGATGGT GCATTCGATGGAGAGCCACAACAAGACTGTAACTTCAATTTGCTTGGGAATGATTGGAGGAGAAGATGCTAGGCAATACAGAATACTGAGCGTGGGTTTA GATGGGTACATGAAGGTGTTCGATTATGCTAAAATGAAGATTACTCATTCAATGAGGTACCCTGCTCCGCTAATGTCGATAGCTGTGTCGCCCGATGGGA AAAGGAGGGCAATTGGGACTTCGAATGGGATGATATTTGCAGGGAAGAGGAAGGTTAAGAAGGATGAGGATGGGGTGGAAGAGGGTTCGGAATATGGGAT TCTGAAGGGATTGGGCAGTGGAGGAGAGATGAAGAGGGTGTTAAGGCCGACGAATTTCAGGTACTTCCAGAGAGGCCAAGGAGAGAAGGCTAATGAAGGG GACTATTTGGTGAGCAGGAAGAAGAAAGTGAAGTTCGCAGAGCATGATAAGCTGCTTAACAAGTTCAGACACAAAGAGGCGCTTGTATCTGTGCTTGGGA GTAAGGATCCGGAGAATGTGGTTGCAGTTATGGAGGAATTGGTGGCACGAAGGAAGCTCATCAAGTGTGTGATGAATCTAGAGGAAGAAGAGCTTGTGTT GCTGCTTAGTTTCCTACACAGGTATGCAACCATGCCGCGGCATTCGCGACTGCTGATGGGATTAACAAGGAAGGTTCTGGAGTTGAGGTCTGAAGATATC AAAGCTTCGGATGTGTTGAAGCTCTCGATTAGGAACCTTAAGAGCTCGCTCGATGCCGAGATCAGGATACAACAGTCGTTGCAAGAGATGCAGGGTATCA TTTCTCCTCTCTTGAGAATTGCTGGCAGAAAATAG
AA sequence Show only first row Show all	>Lus10017890 pacid=23148804 polypeptide=Lus10017890 locus=Lus10017890.g ID=Lus10017890.BGIv1.0 annot-version=v1.0 MADPQQTASISKTFRVKPKLQSKPRNPSKTLESKYWSSFKTTKIENLLSSIPSIEFSPSYPKPSSFAAANLTSLTFFSGQDFSKLSNISVSRDTVTSCSF RRDPLPSCSFRSDGALIAAADLTGEIKVFNTKTRAPLRRLLSHTRPVRFVKYPSLDKLHLVSGGDDAIVKYWDVSTESVVCNLQGHKDYVRCGDCSPIDG GSFLSGSYDHTVKLWDVKDGSNGKAVVEVNHGKPVEDVMFLPSGLMFATAGGNSVKIWDLTGGGRMVHSMESHNKTVTSICLGMIGGEDARQYRILSVGL DGYMKVFDYAKMKITHSMRYPAPLMSIAVSPDGKRRAIGTSNGMIFAGKRKVKKDEDGVEEGSEYGILKGLGSGGEMKRVLRPTNFRYFQRGQGEKANEG DYLVSRKKKVKFAEHDKLLNKFRHKEALVSVLGSKDPENVVAVMEELVARRKLIKCVMNLEEEELVLLLSFLHRYATMPRHSRLLMGLTRKVLELRSEDI KASDVLKLSIRNLKSSLDAEIRIQQSLQEMQGIISPLLRIAGRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10017890 [exp]	0	1
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10035065 [exp]	1.0	0.9420
AT3G22660			rRNA processing protein-relate...		Lus10031698 [exp]	2.0	0.8617
AT3G06200			P-loop containing nucleoside t...		Lus10021947 [exp]	4.2	0.8333
AT1G14060			GCK domain-containing protein ...		Lus10030441 [exp]	4.8	0.7539
AT4G17520			Hyaluronan / mRNA binding fami...		Lus10000599 [exp]	4.9	0.7906
AT3G06200			P-loop containing nucleoside t...		Lus10041236 [exp]	6.9	0.8043
AT1G78190			Trm112p-like protein (.1)		Lus10032269 [exp]	7.5	0.7430
AT1G54850			HSP20-like chaperones superfam...		Lus10035725 [exp]	14.5	0.7736
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10031700 [exp]	15.2	0.7816
AT1G78190			Trm112p-like protein (.1)		Lus10024634 [exp]	18.0	0.7144

Compare expression of checked genes

Lus10017890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.