Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30600 864 / 0 signal recognition particle receptor alpha subunit family protein (.1) AT5G03940 119 / 3e-28 SRP54CP, CPSRP54, FFC SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) AT1G48900 112 / 2e-26 Signal recognition particle, SRP54 subunit protein (.1.2) AT1G15310 107 / 1e-24 SRP54-1, ATHSRP54A signal recognition particle 54 kDa subunit (.1) AT2G45770 97 / 1e-21 FRD4, CPFTSY FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) AT5G49500 93 / 1e-19 Signal recognition particle, SRP54 subunit protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035066 [exp] 1095 / 0 AT4G30600 943 / 0.0 signal recognition particle receptor alpha subunit family protein (.1) Lus10017023 [exp] 115 / 6e-27 AT5G03940 892 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Lus10021346 [exp] 114 / 3e-26 AT5G03940 903 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Lus10029330 [exp] 111 / 1e-25 AT1G48900 816 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Lus10016213 [exp] 110 / 2e-25 AT1G48900 890 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Lus10041358 [exp] 97 / 3e-21 AT2G45770 583 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Lus10036570 [exp] 77 / 9e-15 AT2G45770 564 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G183600 [exp] 907 / 0 AT4G30600 869 / 0.0 signal recognition particle receptor alpha subunit family protein (.1) Potri.018G105900 [exp] 903 / 0 AT4G30600 856 / 0.0 signal recognition particle receptor alpha subunit family protein (.1) Potri.016G078600 [exp] 115 / 9e-27 AT5G03940 928 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Potri.001G253500 [exp] 113 / 2e-26 AT1G48900 882 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Potri.016G112800 [exp] 112 / 6e-26 AT1G48900 887 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Potri.006G211500 [exp] 112 / 8e-26 AT5G03940 859 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Potri.014G078800 [exp] 91 / 1e-19 AT2G45770 593 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00448 [flax] [poplar] SRP54 SRP54-type protein, GTPase domain CL0431 [flax] [poplar] PF PF04086 [flax] [poplar] SRP-alpha_N Signal recognition particle, alpha subunit, N-terminal CL0431 [flax] [poplar] PF02881 [flax] [poplar] SRP54_N SRP54-type protein, helical bundle domain
Representative CDS sequence Show only first row Show all	>Lus10017891 pacid=23148837 polypeptide=Lus10017891 locus=Lus10017891.g ID=Lus10017891.BGIv1.0 annot-version=v1.0 ATGTTAGAGCAGTTGCTCATATTCACAAGAGGAGGGTTGATCCTATGGACTTGTAAAGAGCTTGGAAACGCTCTCAAGGGATCACCAATTGATACCCTTA TCAGATCCTGCCTTTTGGAGGAAAGGTCTGGTGCAGAGTCCTACAACTACGATGCTCCAGGTGGTGCCTATACGCTGAAATGGACTTTCCACAATGAGCT CGGCCTTGTATTTGTCGCTGTGTATCAGCGGATACTTCGGCTGCTCTATGTGGATGAACTGCTTGCCATGATGAAGAGTGAATTCTGTGAGATATATGAT CCAAAGCGGGTGGACTACAATGACTTTGACGAAACTTTTAGGCAGCTTAGGAAAGAGGCTGAGGCCAGGGCAGAGGAGTTGAAGAAATCAAAGCAAGTCG GTAAGCCTGTGAATGATTCTAAAAAACAGGGGCGTTTGAAAAAGAGTGCCACTGATGGAGGAATCAAGAAAAAAAGCGATACAACTGGTGGAAGTGATGA TGATGATAATAGGGCAGGCCATAAATTGGAGAATGGACACTCCAATGGTCATCTCGTTGATAGTGATAGTTCTAATGGATTAGCTGCTGTTAACGGCAAA GAAAATGCTAGTGTTAATGTTGGGGCATTTGATGTAAGTAAGCTCCAGAAGCTCAAGAACAAAGGAGGGAAGAAAAATGATACTGTTGTTAGTAATAGTA TGGGTTCCAAATTGGACCCAAAGAAAAAAGTTACAAAAAAGAATAGGACCTGGGGCGATTCACCTTCACAGCAGCCGAAATTGGACTTCACTGATCCTGT AGAAAATGGAAACGAGAATGTAGATATTGTGCCGGCTATCCAAGGAGAAAGCATGATGGACAAAGAAGAGATCTTTAGCAGTGATAGTGAGGAAGAAGAA GACGAAGAAGATGAAGTTGGCAAGGGAAGAGTGCCTGAATCGAAGAAGACGGGTTGGTTTTCATCCATGTTCCAGAGCATTGCGGGAAAAGCAAATTTGG AGAAGTCAGATCTGGAACCAGCTTTAAAAGCTCTGAAGGACAGGCTTATGACCAAGAATGTGGCTGAAGAGATAGCTGAGAAGCTTTGTGAATCAGTTGC AGCTAGCTTGGTAGGTAAAAAGCATGCATCTTTCACAAGGATATCTTCGACTGTCCAGGCAGCTATGGAGGATGCCCTTGTTCGGATTCTGACCCCTAAA CGGTCTATTGACATATTGAGGGATGTCCATGCTTGTAAGGAACAAAGGAAGCCCTATGTTGTTGTCTTTGTGGGTGTCAATGGGGTTGGAAAATCAACTA ATCTGGCTAAGGTTGCCTATTGGCTTCAGCAGCATAACGTTAGTGTTATGATGGCTGCTTGTGATACATTCCGTTCTGGAGCTGTTGAGCAGCTGCGAAC TCATGCACGGAGACTTCAGATTCCTATATTCGAGAAGGGCTATGAAAAGGATCCTGCTGTAGTTGCAAAAGAAGCAATTCAGGAGGCCACTCGCAACGGG TCTGACGTTGTACTTGTTGACACAGCCGGCCGCATGCAGGATAATGAACCATTGATGAGGGCACTGTCTAAACTTATTTACCTCAACAACCCTGATCTTG TTCTGTTTGTTGGGGAGGCACTGGTTGGAAATGACGCAGTTGATCAACTGTCAAAGTTTAATCAGAAACTGGCTGATCTGTCCCCTTCCCCAAATCCACG GCTTATCGATGGGATCCTGCTTACCAAGTTCGACACCATTGACGATAAGGTTGGAGCTGCGCTTTCCATGGTGTACATTTCAGGAGCGCCAGTGATGTTT GTGGGTTGCGGGCAGTCTTACACCGATCTGAAGAAGTTGAATGTGAAGTCCATTGTGAAGACTCTTCTGAAATGA
AA sequence Show only first row Show all	>Lus10017891 pacid=23148837 polypeptide=Lus10017891 locus=Lus10017891.g ID=Lus10017891.BGIv1.0 annot-version=v1.0 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAESYNYDAPGGAYTLKWTFHNELGLVFVAVYQRILRLLYVDELLAMMKSEFCEIYD PKRVDYNDFDETFRQLRKEAEARAEELKKSKQVGKPVNDSKKQGRLKKSATDGGIKKKSDTTGGSDDDDNRAGHKLENGHSNGHLVDSDSSNGLAAVNGK ENASVNVGAFDVSKLQKLKNKGGKKNDTVVSNSMGSKLDPKKKVTKKNRTWGDSPSQQPKLDFTDPVENGNENVDIVPAIQGESMMDKEEIFSSDSEEEE DEEDEVGKGRVPESKKTGWFSSMFQSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLVGKKHASFTRISSTVQAAMEDALVRILTPK RSIDILRDVHACKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHNVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNG SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSPSPNPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMF VGCGQSYTDLKKLNVKSIVKTLLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30600			signal recognition particle re...		Lus10017891 [exp]	0	1
AT1G11050			Protein kinase superfamily pro...		Lus10018855 [exp]	1.4	0.9660
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10030022 [exp]	2.4	0.9700
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Lus10036023 [exp]	3.9	0.9571
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10008189 [exp]	4.5	0.9610
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Lus10026936 [exp]	4.9	0.9653
AT4G25030			unknown protein		Lus10036513 [exp]	5.6	0.9494
AT4G30600			signal recognition particle re...		Lus10035066 [exp]	5.9	0.9644
AT3G50845			Protein of unknown function (D...		Lus10026019 [exp]	6.7	0.9615
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10008838 [exp]	7.1	0.9568
AT2G02870			Galactose oxidase/kelch repeat...		Lus10037196 [exp]	7.1	0.9416

Compare expression of checked genes

Lus10017891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.