Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71260 271 / 2e-92 WHY2, ATWHY2 WHIRLY 2 (.1) AT1G14410 179 / 1e-55 WHY1, ATWHY1, PTAC1 A. THALIANA WHIRLY 1, ssDNA-binding transcriptional regulator (.1) AT2G02740 175 / 4e-54 WHY3, ATWHY3, PTAC11 PLASTID TRANSCRIPTIONALLY ACTIVE11, A. THALIANA WHIRLY 3, ssDNA-binding transcriptional regulator (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035067 [exp] 438 / 2e-157 AT1G71260 270 / 1e-91 WHIRLY 2 (.1) Lus10036723 [exp] 169 / 1e-51 AT1G14410 342 / 1e-119 A. THALIANA WHIRLY 1, ssDNA-binding transcriptional regulator (.1) Lus10037206 [exp] 113 / 4e-29 AT1G14410 227 / 1e-72 A. THALIANA WHIRLY 1, ssDNA-binding transcriptional regulator (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G048700 [exp] 288 / 6e-99 AT1G71260 283 / 5e-97 WHIRLY 2 (.1) Potri.008G149100 [exp] 160 / 2e-48 AT2G02740 321 / 4e-111 PLASTID TRANSCRIPTIONALLY ACTIVE11, A. THALIANA WHIRLY 3, ssDNA-binding transcriptional regulator (.1.2) Potri.010G092500 [exp] 119 / 2e-32 AT2G02740 208 / 1e-66 PLASTID TRANSCRIPTIONALLY ACTIVE11, A. THALIANA WHIRLY 3, ssDNA-binding transcriptional regulator (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0609 [flax] [poplar] sPC4_like PF08536 [flax] [poplar] Whirly Whirly transcription factor
Representative CDS sequence Show only first row Show all	>Lus10017892 pacid=23148835 polypeptide=Lus10017892 locus=Lus10017892.g ID=Lus10017892.BGIv1.0 annot-version=v1.0 ATGGAGAATGAGACGTTGCTTCTAATGATTTGGAATTGCAGCAAGCCATCATACTGTCAATGGCTTGGTTGCAGGAACTCTCCCTCTGGGAAACCGGGCG TCGGCAGCGATGCTTATCCTCGCCTCCAATCTCCCATTTCCACTACCGCCGCCGGAAATGACGGATTTGCGGGCGATCGGATTTACGCTCCATTCTCGGT GTACAAGGGTAAAGCTGCTCTCTCCGTCACGCCTATCCTCCCAACTTTTACCAAGTTGGATTCCGGGTCTCTCAAGGTCGGTCGCACTGGCACCATGATG ATGACCTTCATGCCCTCTATCGGAGAGCGCAAGTATGACTATGAGAAGAAACAGATGTTTGCTCTATCGCCAACAGAGGTTGGTTCTCTCCTAAGTCTGG GTCCTAAAGATTCTTCCGATTTCTTCCATGACCCCTCTATGAAATCGAGTAATGCAGGCCAGGTGAGGAAGTCCTTGTCAATCAAACCTCATGCTGATGG CAGTGGCTATTTCATTTCACTGAGTGTCGTCAACAACGTGCTCAAAACCAACGACCGCGTAACTGTTCCTATCACAACAGCTGAATTTGTGGTTTTGAAG ACGGCTTGCAGTTTTGCATTGCCCCATATCATTGGTTGGGACCGGCTGACTAGTCCACAGCCACAGCAGCTAAAAGACGTTGGGAATCCATCAAAACGGA AGTTGCATCCAGACTTGGAATGGGATAAATGA
AA sequence Show only first row Show all	>Lus10017892 pacid=23148835 polypeptide=Lus10017892 locus=Lus10017892.g ID=Lus10017892.BGIv1.0 annot-version=v1.0 MENETLLLMIWNCSKPSYCQWLGCRNSPSGKPGVGSDAYPRLQSPISTTAAGNDGFAGDRIYAPFSVYKGKAALSVTPILPTFTKLDSGSLKVGRTGTMM MTFMPSIGERKYDYEKKQMFALSPTEVGSLLSLGPKDSSDFFHDPSMKSSNAGQVRKSLSIKPHADGSGYFISLSVVNNVLKTNDRVTVPITTAEFVVLK TACSFALPHIIGWDRLTSPQPQQLKDVGNPSKRKLHPDLEWDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71260		WHY2, ATWHY2	WHIRLY 2 (.1)		Lus10017892 [exp]	0	1
AT1G17665			unknown protein		Lus10006153 [exp]	1.4	0.8029
AT4G38650			Glycosyl hydrolase family 10 p...		Lus10025054 [exp]	1.7	0.8001
AT3G20240			Mitochondrial substrate carrie...		Lus10034806 [exp]	11.0	0.7530
AT5G02410		ALG10	homolog of yeast ALG10, DIE2/A...		Lus10003973 [exp]	22.2	0.7613
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Lus10016750 [exp]	23.1	0.7833
AT4G36910		CBSX1, CDCP2, L...	LOSS OF THE TIMING OF ET AND J...		Lus10041576 [exp]	25.4	0.7706
AT1G32580			plastid developmental protein ...		Lus10023744 [exp]	30.9	0.7872
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007500 [exp]	44.0	0.7700
AT1G11940			Core-2/I-branching beta-1,6-N-...		Lus10015553 [exp]	49.4	0.7460
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Lus10030539 [exp]	50.0	0.7182

Compare expression of checked genes

Lus10017892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.