Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39050 75 / 2e-15 Kinesin motor family protein (.1) AT1G68710 75 / 2e-15 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G26130 74 / 4e-15 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT1G13210 72 / 2e-14 ACA.L autoinhibited Ca2+/ATPase II, autoinhibited Ca2+/ATPase II (.1) AT3G25610 72 / 3e-14 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G27870 70 / 1e-13 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G17500 66 / 4e-12 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 66 / 4e-12 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G13900 66 / 4e-12 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 66 / 4e-12 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017969 [exp] 195 / 8e-57 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10017496 [exp] 140 / 7e-38 AT4G39050 1235 / 0.0 Kinesin motor family protein (.1) Lus10028790 [exp] 135 / 6e-36 AT4G39050 1242 / 0.0 Kinesin motor family protein (.1) Lus10041958 [exp] 120 / 7e-31 AT4G39050 1202 / 0.0 Kinesin motor family protein (.1) Lus10017906 [exp] 89 / 6e-22 AT4G39050 105 / 7e-42 Kinesin motor family protein (.1) Lus10035068 [exp] 77 / 7e-16 AT1G68710 1677 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10034404 [exp] 74 / 5e-15 AT3G25610 969 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10019152 [exp] 74 / 6e-15 AT3G25610 1871 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008776 [exp] 68 / 8e-13 AT3G27870 1540 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G161100 [exp] 101 / 2e-24 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.009G122100 [exp] 100 / 8e-24 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1) Potri.012G058000 [exp] 74 / 7e-15 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G132700 [exp] 72 / 2e-14 AT1G68710 1753 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G111200 [exp] 72 / 2e-14 AT1G68710 1767 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G349100 [exp] 66 / 4e-12 AT3G27870 1687 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G081200 [exp] 65 / 6e-12 AT1G17500 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.003G043300 [exp] 64 / 1e-11 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G197500 [exp] 64 / 1e-11 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.006G109200 [exp] 57 / 3e-09 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017893 pacid=23148797 polypeptide=Lus10017893 locus=Lus10017893.g ID=Lus10017893.BGIv1.0 annot-version=v1.0 ATGGTTAAAGAAGGCATTGAAGATTGGCGTTGTAAACAACAGGCTGTCATGTCAAGTGACGTTGCAATTGCTCAATTTCGATACCTGGAGCGTTTGCTAC TTGTACATGGACATTGGTGTTACAGAAGAATATCAGCAATGGTAATGCTAGATTTGCTACTTCTTTTACAAGAATGTTACATTTGGAATCTCGAGTCGTT GCAATCTCGATCTGCCGTTGCACAAAATGGTAGCAGCTGCAAATATAATGACGGAATAAGATCCAGGAGGAAAGGCCGGTTCTCTGGCAGGGGAAACGAA ATGCAAATGCACTCGGATGACTTTGAGTCGTGGGATCTTGATCCTAATGATATGAAGATGGAATTGCAGGCAAGGAAACAGCGAGAGGCAGCACTTGAGG CTGCCTTGGCTGAAAAGGAACTCATAGAAGATGAGTACAGGAAGCGTGCTGAAGAAGCAAAACGAAGGGAAGAATCGTTGGAGAATGACTTGGCAAACAT GTGGGTGCTTGTTGCTAAGTTGAAGAAGGAAGGAGGAAATGTCACCAAGTTTAACACCCACGAAAGGACCAGTACTGGAGCTGGGTATCACATGAGCGGA CCAGAATTGGACGGGTTCGAGCATGGTTCTGTCTTGAGAGAAGACAAGTCAGTAGCGATGATTCGAAGCGAGCCGATGATATGCAAAAGGAAGAGCCGTT GGTTGTTCGTTTGA
AA sequence Show only first row Show all	>Lus10017893 pacid=23148797 polypeptide=Lus10017893 locus=Lus10017893.g ID=Lus10017893.BGIv1.0 annot-version=v1.0 MVKEGIEDWRCKQQAVMSSDVAIAQFRYLERLLLVHGHWCYRRISAMVMLDLLLLLQECYIWNLESLQSRSAVAQNGSSCKYNDGIRSRRKGRFSGRGNE MQMHSDDFESWDLDPNDMKMELQARKQREAALEAALAEKELIEDEYRKRAEEAKRREESLENDLANMWVLVAKLKKEGGNVTKFNTHERTSTGAGYHMSG PELDGFEHGSVLREDKSVAMIRSEPMICKRKSRWLFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39050			Kinesin motor family protein (...		Lus10017893 [exp]	0	1
AT4G32840		PFK6	phosphofructokinase 6 (.1)		Lus10005488 [exp]	17.6	0.6668
AT2G33640			DHHC-type zinc finger family p...		Lus10025157 [exp]	37.3	0.6410
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10042514 [exp]	57.7	0.5934
AT1G05170			Galactosyltransferase family p...		Lus10040062 [exp]	58.8	0.6033
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Lus10037347 [exp]	64.0	0.5373
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10036889 [exp]	78.5	0.5829
AT3G54120			Reticulon family protein (.1)		Lus10035537 [exp]	79.8	0.5997
AT5G20930		TSL	TOUSLED, Protein kinase superf...		Lus10019383 [exp]	134.9	0.5245
AT4G23660		ATPPT1	polyprenyltransferase 1 (.1.2....		Lus10001531 [exp]	135.4	0.5376
AT2G22530			Alkaline-phosphatase-like fami...		Lus10035939 [exp]	157.7	0.5428

Compare expression of checked genes

Lus10017893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.