Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06450 47 / 9e-07 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27820 44 / 1e-05 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27890 43 / 2e-05 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G61470 42 / 5e-05 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT2G32070 40 / 0.0002 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G15920 40 / 0.0002 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT1G80780 40 / 0.0002 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017905 [exp] 255 / 2e-86 AT1G06450 162 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10035077 [exp] 245 / 2e-82 AT1G61470 162 / 6e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000561 [exp] 228 / 1e-75 AT1G61470 143 / 1e-40 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10001651 [exp] 228 / 1e-74 AT1G61470 167 / 4e-49 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10008043 [exp] 202 / 1e-65 AT1G06450 165 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10038112 [exp] 197 / 2e-65 AT1G06450 52 / 4e-08 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10035078 [exp] 120 / 1e-33 AT1G06450 168 / 2e-49 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000327 [exp] 110 / 6e-30 AT1G06450 174 / 1e-51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10007771 [exp] 74 / 4e-16 AT1G61470 170 / 5e-51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G038700 [exp] 48 / 4e-07 AT1G61470 182 / 8e-56 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G187200 [exp] 44 / 8e-06 AT2G32070 403 / 2e-143 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.003G181100 [exp] 42 / 6e-05 AT1G80780 468 / 1e-168 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) Potri.001G046700 [exp] 40 / 0.0002 AT2G32070 472 / 2e-170 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G262500 [exp] 39 / 0.0006 AT2G32070 443 / 5e-159 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.018G020900 [exp] 38 / 0.001 AT2G32070 441 / 2e-158 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017894 pacid=23148840 polypeptide=Lus10017894 locus=Lus10017894.g ID=Lus10017894.BGIv1.0 annot-version=v1.0 ATGGCTAAGTTCTATGAAGACACATTGAGTGAAATTGGGTTGCAGAAGTTAGCGGATGCTTTGGGGGTTAAGAGAAGAGGGGAAGCTCATACTGCCGCCT CTGATAGTTTCTTGACGGCGCTGGTTTACTTTGAGTTGAAGAAGAAACTGATGCTGTTGGGTGTTGATGAAGAGTCTTACGTTGATTACGTCTATGGAAT CAGCACCAAAATCTCCAGGAAGCAGAAAGAGCCCCTCTTTCTACCAACTGCTCGACCAGCAGGTCCTCCTGTGTATCATCATCATCCTTATCATCCTCAT CTTTATCAGAGTAAGGTGCTGTATCCCATTCCATATCAGCAGAGAGTAGTACCCTTGCCTCCAAATGTGATGATGGGTCGTCGTTGGGTTGATTGCTCAT TAGCTCCAACAGTATTAGTTCCTTCTTTCATCTACTGA
AA sequence Show only first row Show all	>Lus10017894 pacid=23148840 polypeptide=Lus10017894 locus=Lus10017894.g ID=Lus10017894.BGIv1.0 annot-version=v1.0 MAKFYEDTLSEIGLQKLADALGVKRRGEAHTAASDSFLTALVYFELKKKLMLLGVDEESYVDYVYGISTKISRKQKEPLFLPTARPAGPPVYHHHPYHPH LYQSKVLYPIPYQQRVVPLPPNVMMGRRWVDCSLAPTVLVPSFIY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06450			Polynucleotidyl transferase, r...		Lus10017894 [exp]	0	1
AT5G50130			NAD(P)-binding Rossmann-fold s...		Lus10018092 [exp]	4.1	0.7884
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10022735 [exp]	6.5	0.7803
AT1G50670			OTU-like cysteine protease fam...		Lus10021522 [exp]	9.6	0.7798
AT2G46220			Uncharacterized conserved prot...		Lus10010135 [exp]	16.6	0.7750
AT5G52880			F-box family protein (.1)		Lus10027547 [exp]	19.6	0.7496
					Lus10025227 [exp]	23.4	0.7671
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10029753 [exp]	24.3	0.7405
AT1G06450			Polynucleotidyl transferase, r...		Lus10017905 [exp]	25.3	0.7070
AT1G22100			Inositol-pentakisphosphate 2-k...		Lus10024274 [exp]	28.6	0.7028
AT1G25220		WEI7, TRP4, ASB...	WEAK ETHYLENE INSENSITIVE7, TR...		Lus10030761 [exp]	34.9	0.7292

Compare expression of checked genes

Lus10017894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.