Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71850 472 / 2e-161 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G24320 264 / 4e-82 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G58520 219 / 9e-65 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT5G48040 213 / 4e-62 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G39120 187 / 3e-53 WTF9 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G31290 154 / 6e-41 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT3G63090 142 / 1e-36 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G33495 136 / 1e-34 RPD1 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G06440 136 / 1e-34 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G01037 136 / 8e-34 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035074 [exp] 1114 / 0 AT1G71850 479 / 5e-164 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10015979 [exp] 207 / 5e-60 AT3G58520 564 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10011327 [exp] 200 / 7e-58 AT5G48040 425 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10012201 [exp] 197 / 1e-56 AT5G48040 424 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10005750 [exp] 191 / 2e-54 AT1G71850 263 / 9e-85 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000847 [exp] 189 / 5e-54 AT3G58520 501 / 1e-178 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10038710 [exp] 179 / 1e-49 AT2G39120 467 / 4e-164 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10027445 [exp] 151 / 2e-42 AT4G24320 206 / 9e-66 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000098 [exp] 154 / 1e-40 AT3G63090 557 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G115500 [exp] 551 / 0 AT1G71850 474 / 1e-161 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.004G223200 [exp] 266 / 3e-82 AT4G24320 437 / 4e-152 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G230900 [exp] 215 / 3e-63 AT5G48040 484 / 9e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G195900 [exp] 214 / 7e-63 AT3G58520 578 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.008G036600 [exp] 192 / 1e-54 AT2G39120 509 / 0.0 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G220000 [exp] 166 / 3e-45 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.005G191100 [exp] 143 / 4e-37 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G245100 [exp] 135 / 2e-34 AT1G06440 544 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.014G096800 [exp] 137 / 4e-34 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.015G141700 [exp] 134 / 2e-33 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [flax] [poplar] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Lus10017896 pacid=23148794 polypeptide=Lus10017896 locus=Lus10017896.g ID=Lus10017896.BGIv1.0 annot-version=v1.0 ATGATCTTCCTCTTTCGCCGAATCTCCAACCCTCGCCGCCACCTTCACCACCGTACAATCGTCGATTTCGCCGCAATCAAGCACGTCCGTGACCGAGGGT TTGATCATGCCGTTGAGCGCGAGAACCATCTCAAGCCCTTGATTCACCTCAAGAACCTAATCAAATCGGAGCCGGCCAAGTCATTACCCCTTCCCATCAT CTCCCAACACAGAGATTCCCTCCACATACCCATCCGTCCCATCGAGTTCATCCGGAAGTATCCTGCCGTTTTCGAGGAATTTCTCCCCGGCGGATTAGGG ATTCACCCTCACATTAAGCTCACTCAACAAGTAATCGATCTCGATGCTGAAGAGCAGTTGGTTTACCAGAGTCAAAGTTACAAGAAGCATGTCGCTGATA GGCTTGTTAAGTTGGTTATGCTCTCGCGAATTGATAAGATACCGTTGAACATTCTTGATAGCATTAGGTGGGATCTAGGTTTGCCAGATGATTATGCCAA AGCGATAGTTCCTGAGTTTCCTGATTACTTCAGAATCGTTGGTAACAAAAAATCACTAGAGCTGGTATGCTGGAATGATGAATTGGCTGTTTCATTGATG GAGAAGAAGGCTAAAAGTGGAGGTAAAGTTTACGAAAAGGGGATGCCTCTCTCGTTCCAGATGAAGTTTTCGGAAGGGTTTGAGATGGATAAGAAGGTGA ATAACTGGTTTCAAGAGTGGCAGAAGCTGCCTTATATCTCACCATATGAGAATGCCACACATTTGGGGTCTAACACCGATGATGCCGATAAATGGGCAGT CGCGGTTTTGCACGAGCTTCTGAATCTGTTTGTTTCGAAGAAGGCGGAGAGGGAGGTTCTATTGTCTCTGGGGGAGTGGTTGGGGATTCGATCTTCGTTC AAGAGAGCGTTGATTCAACATCCTGGGATTTTGTACGTCTCGGGAAAGATGGGAACACATACTGTGGTTCTGAAAGAGGGATACATAAGAGGATGGTTGG TTGAGAAGAATGAACTTGTTGATATCAGGAATCGATATATGCATCTTATGCACTTGGTGAATGAAGATTGTAAGGAAACTGCTGCTCCTGCAGCAAGTAA GAAAGATCGGAAGAAGACAACTAAGCAGCTAGAATTGAAAGATAGTAATCAAGAGAATGATGCTGCAAATGCAAAGGAATCTGAGCTTGATGATGATAGT GATGATGAAGTTGCTTATGATGATGATGATGATGATGAAGAGAGTGATGATGATGATGAAATTGAGAGTAAGAAACCCGAACGTGGTAATAGAAATGCTG AAATTGGCAAGAGAAGAGCAGGTAACTCGAGGACATTGGAAATGAGGGGTCCAAGAACAGAAAGGTCTGTCAATAGACCCTACAAGAAGGGGATGGATTT CAGCGCAGAAGATTCTCGAAGAATAGACACACGAAGGAGTTCGGACACGAGGGGTCCAAGAACAGAAAGGTCTGTTGATAGACCCTACAAGAAGAGGACA GATTTCAATGCAGAAGATTCCCGAAGAATAGATACACGAAGGAATTCGGAGATGAGGGGGCCTTCGAGGGGTCCAAGAAGAGAAGCATCCGTTGATAGAC CCTATAGGAAGAGTACGGAAAACAGTCCTGATGGTCACAGACGAATAGAAACGCAAAGGAACACGGAAATGAGGGGGGCTTCAAGGGGTCCAAGAAGAGA AGCATCTGTTGATAGACTATATAGGAAGATTAACGAAGCCCGACAGAATCACGACTTGAGGGGGCCTTTAAGAGTTCCAACAAGGGAACGCACAGATGAT AAGCCTTACAGCAGGAACCGTGCAAGTAAAGCTTATGGTGGAGATTCCCAAATTACTGGCACACGCACACGTAGTGATTCCAGGGAAACCGTGGGGGAAA GGACAGCTTCCCCTAGGAACTTGCAGAAATCTTTCGCTGATAAGAGAGTTGCTTAG
AA sequence Show only first row Show all	>Lus10017896 pacid=23148794 polypeptide=Lus10017896 locus=Lus10017896.g ID=Lus10017896.BGIv1.0 annot-version=v1.0 MIFLFRRISNPRRHLHHRTIVDFAAIKHVRDRGFDHAVERENHLKPLIHLKNLIKSEPAKSLPLPIISQHRDSLHIPIRPIEFIRKYPAVFEEFLPGGLG IHPHIKLTQQVIDLDAEEQLVYQSQSYKKHVADRLVKLVMLSRIDKIPLNILDSIRWDLGLPDDYAKAIVPEFPDYFRIVGNKKSLELVCWNDELAVSLM EKKAKSGGKVYEKGMPLSFQMKFSEGFEMDKKVNNWFQEWQKLPYISPYENATHLGSNTDDADKWAVAVLHELLNLFVSKKAEREVLLSLGEWLGIRSSF KRALIQHPGILYVSGKMGTHTVVLKEGYIRGWLVEKNELVDIRNRYMHLMHLVNEDCKETAAPAASKKDRKKTTKQLELKDSNQENDAANAKESELDDDS DDEVAYDDDDDDEESDDDDEIESKKPERGNRNAEIGKRRAGNSRTLEMRGPRTERSVNRPYKKGMDFSAEDSRRIDTRRSSDTRGPRTERSVDRPYKKRT DFNAEDSRRIDTRRNSEMRGPSRGPRREASVDRPYRKSTENSPDGHRRIETQRNTEMRGASRGPRREASVDRLYRKINEARQNHDLRGPLRVPTRERTDD KPYSRNRASKAYGGDSQITGTRTRSDSRETVGERTASPRNLQKSFADKRVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71850			Ubiquitin carboxyl-terminal hy...		Lus10017896 [exp]	0	1
AT3G02760			Class II aaRS and biotin synth...		Lus10030341 [exp]	3.2	0.9362
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10013988 [exp]	3.5	0.9363
AT3G02330			Pentatricopeptide repeat (PPR)...		Lus10014594 [exp]	5.5	0.8946
AT5G14580			polyribonucleotide nucleotidyl...		Lus10008763 [exp]	6.0	0.9232
AT4G25730			FtsJ-like methyltransferase fa...		Lus10040439 [exp]	7.2	0.9258
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043478 [exp]	8.9	0.9200
AT1G64600			methyltransferases;copper ion ...		Lus10017309 [exp]	9.7	0.8859
AT3G02760			Class II aaRS and biotin synth...		Lus10041073 [exp]	10.1	0.9284
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10024831 [exp]	10.6	0.9076
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Lus10042058 [exp]	11.7	0.9068

Compare expression of checked genes

Lus10017896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.