Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26160 316 / 2e-109 Metal-dependent phosphohydrolase (.1) AT2G23820 261 / 2e-87 Metal-dependent phosphohydrolase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035072 [exp] 471 / 4e-170 AT1G26160 319 / 5e-110 Metal-dependent phosphohydrolase (.1) Lus10015497 [exp] 277 / 5e-94 AT2G23820 331 / 2e-115 Metal-dependent phosphohydrolase (.1.2) Lus10019968 [exp] 275 / 2e-93 AT2G23820 332 / 1e-115 Metal-dependent phosphohydrolase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G111700 [exp] 348 / 4e-122 AT1G26160 352 / 9e-124 Metal-dependent phosphohydrolase (.1) Potri.006G178600 [exp] 272 / 3e-92 AT2G23820 305 / 2e-105 Metal-dependent phosphohydrolase (.1.2) Potri.010G133001 [exp] 81 / 2e-19 AT1G26160 84 / 2e-21 Metal-dependent phosphohydrolase (.1) Potri.010G133101 [exp] 72 / 2e-16 AT1G26160 82 / 8e-21 Metal-dependent phosphohydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0237 [flax] [poplar] HD_PDEase PF01966 [flax] [poplar] HD HD domain
Representative CDS sequence Show only first row Show all	>Lus10017897 pacid=23148829 polypeptide=Lus10017897 locus=Lus10017897.g ID=Lus10017897.BGIv1.0 annot-version=v1.0 ATGGCAGTCAGTCCCTCTACCTTCTACTCTTCGCCCGCGCTCGACCGTTCCCTGCTTCATGGCGGCCGTTCGTCCTCCGTTTTCTTCACCCGTCCCCTTT CCCGTCCCATTTTCTCGAATGATGCGCCCCTCCCGAGGTTCGCCGTCTCGGTTCGCTCTCATAAGATTGACGAGCTGAGCGGGCATGGACCTACGAAATC GCATTCTGAGGAGAACGGGTCGTCATCGTCTGTTTCCTCGTCGATTGATTTTCTCACCTTCTGCCATCGCCTCAAGACTACGAAACGGAAGGGGTGGATC AATCATGGGATTAATGGCGCTGAATCTATCGCTGATCACATGTACCGCATGGCTCTGATGTCTCTGGTCGTCGGTGACCTTCCTGGTGTCAACAGAGAAA GATGTATGAAGATTGCAATCGTCCATGATATTGCAGAAGCTATTGTTGGAGATATAACACCATCTGATGACGTGCCTAAGGCAGAAAAGAGCAGACTTGA GCAAGCGGCATTAGATGAAATGTGCAAAATGCTTGGCGGAGGAACGAGAGCTGAAGAGATCAAAGAATTGTGGTATGAGTATGAAAACAATGCTTCCTTG GAGGCAAACCTTGTCAAGGATTTCGACAAAGTTGAGATGATTCTGCAAGCATTGGAATACGAAACTGAGCGTGGGAAGGTGTTGGATGAATTCTTCATTT CAACTGCAGGCAAATTCCAGACCGATATAGGAAAGAGTTGGGCAGCCGAGATCATATCGAGAAGGAAGTCATCACAACAGGCCGACAAGCTATGA
AA sequence Show only first row Show all	>Lus10017897 pacid=23148829 polypeptide=Lus10017897 locus=Lus10017897.g ID=Lus10017897.BGIv1.0 annot-version=v1.0 MAVSPSTFYSSPALDRSLLHGGRSSSVFFTRPLSRPIFSNDAPLPRFAVSVRSHKIDELSGHGPTKSHSEENGSSSSVSSSIDFLTFCHRLKTTKRKGWI NHGINGAESIADHMYRMALMSLVVGDLPGVNRERCMKIAIVHDIAEAIVGDITPSDDVPKAEKSRLEQAALDEMCKMLGGGTRAEEIKELWYEYENNASL EANLVKDFDKVEMILQALEYETERGKVLDEFFISTAGKFQTDIGKSWAAEIISRRKSSQQADKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26160			Metal-dependent phosphohydrola...		Lus10017897 [exp]	0	1
AT1G71940			SNARE associated Golgi protein...		Lus10014818 [exp]	7.4	0.8020
AT1G36370		SHM7	serine hydroxymethyltransferas...		Lus10015471 [exp]	8.0	0.8053
AT5G19860			Protein of unknown function, D...		Lus10013752 [exp]	8.0	0.8090
AT1G63850			BTB/POZ domain-containing prot...		Lus10024658 [exp]	9.4	0.8510
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10005390 [exp]	15.1	0.8062
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Lus10020241 [exp]	18.5	0.7897
AT3G12150			unknown protein		Lus10027799 [exp]	23.6	0.7619
AT4G16360			5'-AMP-activated protein kinas...		Lus10038783 [exp]	26.6	0.7861
AT4G18593			dual specificity protein phosp...		Lus10018112 [exp]	26.9	0.7610
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10033524 [exp]	29.1	0.7913

Compare expression of checked genes

Lus10017897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.