Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68690 536 / 0 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT1G26150 535 / 0 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT5G38560 491 / 5e-165 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G70460 427 / 7e-140 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G23540 427 / 1e-139 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G10620 418 / 3e-136 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT1G70450 382 / 1e-126 Protein kinase superfamily protein (.1) AT3G24550 390 / 3e-126 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT2G18470 388 / 7e-126 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT4G34440 385 / 3e-124 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035071 [exp] 719 / 0 AT1G68690 570 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Lus10034082 [exp] 519 / 4e-175 AT5G38560 700 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10003066 [exp] 516 / 4e-174 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10029151 [exp] 408 / 3e-136 AT1G23540 575 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10013014 [exp] 405 / 3e-135 AT1G23540 572 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10011098 [exp] 406 / 2e-132 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10013013 [exp] 405 / 1e-130 AT1G70460 596 / 0.0 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) Lus10023645 [exp] 401 / 6e-130 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10043219 [exp] 395 / 3e-128 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G111600 [exp] 580 / 0 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.010G132900 [exp] 576 / 0 AT1G26150 605 / 0.0 proline-rich extensin-like receptor kinase 10 (.1) Potri.017G110400 [exp] 526 / 5e-178 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.004G105200 [exp] 515 / 6e-174 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.008G189700 [exp] 439 / 5e-144 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Potri.018G081300 [exp] 402 / 9e-131 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.005G124400 [exp] 396 / 2e-129 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.007G027000 [exp] 394 / 7e-128 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.001G183000 [exp] 371 / 5e-120 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.006G242800 [exp] 374 / 5e-119 AT3G24550 449 / 6e-149 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10017898 pacid=23148852 polypeptide=Lus10017898 locus=Lus10017898.g ID=Lus10017898.BGIv1.0 annot-version=v1.0 ATGGCATCGATATCTCCAGCCCCTAACTCTTCAATTCCTGCTGCTGTTCCTCCACCATCCACACCATTGCCACCAACAACATCACCACCACCACAAGATA ATTCTACTCAGTCACCTCCACCCTTGCCGCCTTCTTCATCACAACCACCTCTCCTTAGCCCTCCTCCACCTGCAACACCGTCAACTCCACCACCCCAGCA ATCTACATCACCACCACCTAGTTCACCGAGCGGTCCTCCTCCTAGTCCTCCACCATCACTACCTTCTATTCCTCCACCTACATTGCCAACGCCACCACCA CCACCGGTACCACCTACTAATGCCCCTCCACCACCACCGGTACCGGTACCGCCATCTGATCCACCTACTAATCCTTCTCCACCACCACCGGTGCCACCAT CTGATCCACCTATTAGTCCTTCTCCACCACCATCCACACCACAGCCACCACAAACTTCAACTCCTCCCTCGCCACCTCCACCTTTGCGATCAACTCAGCC TCCACCTCAAAGTTCACCGCCACCACCATCAGAACCACCTACTAGTACACCTGTACCACCTAGAAATTCACCTCCTCCGCCAAGAAGTGGACCTCTATCT CCACCACCTCCTCCAAGACCAATATCTGCCCCACCTCCGAGTAATACTTCCCTGCCTGCTCCAACTCCACCTAACTTGCAACCAACCACCCCTTCAGGAC CAAATTCCACTCAATCAACTCCACCACCGGTGAGCAGATTGGCTCCACCTCCTCTCTCGTTAAGTTCTCCACCATCATCTGTGAACAATACTGTTCCTAG TGCTCCAGACACTTCTAGTCAAAATGGTGGACACAGCGGGATTGGTACTGGTGCAATTGTGGGCATTGGCGCAGTGGTTGGGTTCTTGATTCTGAGTCTT ATTGGGGTTGCAGCTTGGTGCATAAGGAAACGTAGGAAAGCTATCTCTAGAGTGAATGGTGATTATGTGATGCCCTCACCCACTGCATCCACCCCGGATT CAGGTTCAAGTTACACAAAGACACAGTCTACTACAGCTCCACTGATGGCGAGTGGTTCCAGCAGTGACTTCATTAATTCCCCCCCAGAGCCTAATGGACT AGGCCACTCAAGGAATTTGTTTACGTATGAAGAAATGGTCACAGCAACCAATGGATTTTCATCCCAGAATCTGTTGGGTGAAGGCGGGTTTGGGTGTGTG TATAAAGGCAACCTGCCAGATGGTACAGAGGTAGCAGTAAAACAACTCAACATCAGTGGAAGCCAGGGTGAACGAGAATTTAAAGCTGAAGTAGATATCA TTAGCCGAGTGCACCATCGACATTTGGTTTCACTTGTTGGCTATTGCATCTCGAATAGCCAAAGATTGCTTGTATATGATTATGTCCCTAACAACACCCT TGATTTCCATCTTCACGGGGAAGGTGTACCTCTTTTGGACTGGGCAAAACGTATCAAAATAGCTGCTGGTGCTGCTCGCGGATTAGCTTATCTACATGAA GACTGTCATCCTCGAATTATTCATAGGGATATCAAGTCGTCAAACATTCTTTTAGATAACAACTTTGAAGCCCAGGTTGCAGATTTTGGTCTTGCCAAAC TTAATCCTGATGCCAACACACATATAACCACACGCGTGATGGGAACTTATGGGTATGTTGCTCCGGAGTATGTCATAAGTGGCAAGTTAACTGAAAAATC TGATGTTTACTCCTTTGGAGTTGTGCTTTTAGAGTTGATCACTGGGCAGAAGCCGGTGGATCCCTCCCAGTCTCCGGGAAAAGAGAGTCTTGTTGAACGG GCACGCCCTTTCCTGAGTCATGCTCTAGTCAGTGGAGAACTAGGACGTCTAATAGATCCAAGGCTTGAGGGGAACTACGTCGATGCTGAAATGTTCAGGA TGATTGAGTCTGCTGCAGCCTGTGTCCGCCATGCTGCTGCAAAAAGACCCCGAATGGACCAGATTGTCAGAGCTCTCAACGACATAGCTGCTGCGGATTT AACCAACGGAATGAAAATCGGAGAGAGCGAGGTAATCAGATCAGCAGGAGAGTCTGCACAGATTAGATTAATGCAAAGGATGGCATTTGGTGACCAAGAT TTTAGTACAGATTTCTTTACCCGCAGTACCATGAATAGTCGAAATGACAGTCGAGTTTAA
AA sequence Show only first row Show all	>Lus10017898 pacid=23148852 polypeptide=Lus10017898 locus=Lus10017898.g ID=Lus10017898.BGIv1.0 annot-version=v1.0 MASISPAPNSSIPAAVPPPSTPLPPTTSPPPQDNSTQSPPPLPPSSSQPPLLSPPPPATPSTPPPQQSTSPPPSSPSGPPPSPPPSLPSIPPPTLPTPPP PPVPPTNAPPPPPVPVPPSDPPTNPSPPPPVPPSDPPISPSPPPSTPQPPQTSTPPSPPPPLRSTQPPPQSSPPPPSEPPTSTPVPPRNSPPPPRSGPLS PPPPPRPISAPPPSNTSLPAPTPPNLQPTTPSGPNSTQSTPPPVSRLAPPPLSLSSPPSSVNNTVPSAPDTSSQNGGHSGIGTGAIVGIGAVVGFLILSL IGVAAWCIRKRRKAISRVNGDYVMPSPTASTPDSGSSYTKTQSTTAPLMASGSSSDFINSPPEPNGLGHSRNLFTYEEMVTATNGFSSQNLLGEGGFGCV YKGNLPDGTEVAVKQLNISGSQGEREFKAEVDIISRVHHRHLVSLVGYCISNSQRLLVYDYVPNNTLDFHLHGEGVPLLDWAKRIKIAAGAARGLAYLHE DCHPRIIHRDIKSSNILLDNNFEAQVADFGLAKLNPDANTHITTRVMGTYGYVAPEYVISGKLTEKSDVYSFGVVLLELITGQKPVDPSQSPGKESLVER ARPFLSHALVSGELGRLIDPRLEGNYVDAEMFRMIESAAACVRHAAAKRPRMDQIVRALNDIAAADLTNGMKIGESEVIRSAGESAQIRLMQRMAFGDQD FSTDFFTRSTMNSRNDSRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68690		AtPERK9	proline-rich extensin-like rec...		Lus10017898 [exp]	0	1
AT2G40095			Alpha/beta hydrolase related p...		Lus10014849 [exp]	5.7	0.8221
					Lus10034451 [exp]	7.1	0.8441
AT2G34500		CYP710A1	cytochrome P450, family 710, s...		Lus10028129 [exp]	9.9	0.8291
AT5G55550			RNA-binding (RRM/RBD/RNP motif...		Lus10011728 [exp]	21.1	0.7419
AT4G28300			Protein of unknown function (D...		Lus10039827 [exp]	21.9	0.7637
AT1G19180	ZIM	TIFY10A, JAZ1	jasmonate-zim-domain protein 1...		Lus10027648 [exp]	23.0	0.8181
AT5G65100	EIL		Ethylene insensitive 3 family ...		Lus10014331 [exp]	26.4	0.8004
AT1G51660		ATMKK4, ATMEK4	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10035764 [exp]	26.9	0.7947
AT1G57610			Protein of unknown function (D...		Lus10019127 [exp]	28.1	0.7648
AT3G08760		ATSIK	Protein kinase superfamily pro...		Lus10014168 [exp]	28.4	0.8151

Compare expression of checked genes

Lus10017898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.